Aliases for RNU7-23P Gene

Aliases for RNU7-23P Gene

  • RNA, U7 Small Nuclear 23 Pseudogene 2 3 5
  • U7.23 2 3
  • RNA, Small Nuclear U7.23 Pseudogene 3
  • RNU7-23P 5

External Ids for RNU7-23P Gene

Previous GeneCards Identifiers for RNU7-23P Gene

  • GC11U901069
  • GC11P066688
  • GC11P063015

Summaries for RNU7-23P Gene

GeneCards Summary for RNU7-23P Gene

RNU7-23P (RNA, U7 Small Nuclear 23 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-23P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU7-23P Gene

Genomics for RNU7-23P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU7-23P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J066921 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 250.7 +1.6 1604 1.2 IKZF1 ZNF592 ZNF316 NFE2 MYNN IRF9 ZNF318 SPI1 ETV1 EP400 RNU7-23P RF00066-034 ACTN3 piR-50437-082 PC LRFN4
GH11J066920 Enhancer 0.4 FANTOM5 dbSUPER 250.7 +0.4 367 0.1 RNU7-23P RF00066-034 CARNS1 piR-50437-082 PC LRFN4
GH11J066675 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.2 -242.8 -242846 4.6 BCLAF1 SP1 MYC ZNF654 IKZF1 ZNF600 ZNF580 ZNF592 KLF9 POLR2A HSALNG0085059 RBM4B lnc-RBM4-2 RBM14 RBM4 RAD9A CCS RCE1 SF3B2 ENSG00000245156
GH11J067021 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 10.9 +103.8 103830 3.8 ZNF654 ZNF600 ZNF580 BRCA1 ZIC2 NFIC YY1 REST CEBPB CTCF SYT12 RHOD PC RNU7-23P CTSF lnc-RHOD-3 lnc-C11orf86-1
GH11J066962 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +47.5 47539 12.2 IKZF1 JUND ZNF592 CEBPA ATF3 BRCA1 ZIC2 YY1 CEBPB DEK CLCF1 RAD9A PC RNU7-23P ACTN3 CTSF SPTBN2 DPP3-DT GRK2 KDM2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU7-23P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU7-23P Gene

Latest Assembly
chr11:66,919,762-66,919,823
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand

Previous Assembly
chr11:66,687,234-66,687,293
(GRCh37/hg19 by Entrez Gene)
Size:
60 bases
Orientation:
Plus strand

chr11:66,687,233-66,687,294
(GRCh37/hg19 by Ensembl)
Size:
62 bases
Orientation:
Plus strand

Genomic View for RNU7-23P Gene

Genes around RNU7-23P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-23P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-23P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-23P Gene

Proteins for RNU7-23P Gene

Post-translational modifications for RNU7-23P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-23P Gene

Domains & Families for RNU7-23P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU7-23P Gene

Function for RNU7-23P Gene

Phenotypes From GWAS Catalog for RNU7-23P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-23P Gene

Localization for RNU7-23P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-23P Gene

Pathways & Interactions for RNU7-23P Gene

PathCards logo

SuperPathways for RNU7-23P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU7-23P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU7-23P Gene

Drugs & Compounds for RNU7-23P Gene

No Compound Related Data Available

Transcripts for RNU7-23P Gene

mRNA/cDNA for RNU7-23P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-23P Gene

No ASD Table

Relevant External Links for RNU7-23P Gene

GeneLoc Exon Structure for
RNU7-23P

Expression for RNU7-23P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-23P Gene

Orthologs for RNU7-23P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-23P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U7 30
  • 100 (a)
OneToOne
Species where no ortholog for RNU7-23P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU7-23P Gene

ENSEMBL:
Gene Tree for RNU7-23P (if available)
TreeFam:
Gene Tree for RNU7-23P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU7-23P

Paralogs for RNU7-23P Gene

No data available for Paralogs for RNU7-23P Gene

Variants for RNU7-23P Gene

Additional Variant Information for RNU7-23P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-23P
Leiden Open Variation Database (LOVD)
RNU7-23P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-23P Gene

Disorders for RNU7-23P Gene

No disorders were found for RNU7-23P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-23P Gene

Publications for RNU7-23P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3

No data available for Mastermind for RNU7-23P Gene

Products for RNU7-23P Gene

Sources for RNU7-23P Gene