Aliases for RNU7-180P Gene

Aliases for RNU7-180P Gene

  • RNA, U7 Small Nuclear 180 Pseudogene 2 3 5
  • RNU7-180P 5

External Ids for RNU7-180P Gene

Previous GeneCards Identifiers for RNU7-180P Gene

  • GC05M145625

Summaries for RNU7-180P Gene

GeneCards Summary for RNU7-180P Gene

RNU7-180P (RNA, U7 Small Nuclear 180 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-180P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU7-180P Gene

Genomics for RNU7-180P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU7-180P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J146202 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +41.0 41009 4 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 RFX1 LEF1 SOX13 IKZF1 RBM27 ENSG00000275740 LARS1 RF00066-160 RNU7-180P POU4F3
GH05J146212 Enhancer 0.9 Ensembl 0.3 +30.0 29952 7 ZNF221 GATAD2A ZNF629 LEF1 ZNF692 ZNF300 PRDM1 ZNF37A CEBPA ZNF561 LARS1 TCERG1 RBM27 ENSG00000275740 RF00066-160 RNU7-180P POU4F3
GH05J146251 Promoter 0.4 EPDnew 0.4 -6.5 -6498 0.1 RBM22 RBM27 RNU7-180P RF00066-160 piR-57461-195 ENSG00000275740 POU4F3
GH05J146230 Promoter 0.4 EPDnew 0.4 +14.5 14507 0.1 SMARCA4 RBM27 RF00066-160 RNU7-180P ENSG00000275740 POU4F3
GH05J146237 Promoter 0.3 EPDnew 0.4 +7.9 7892 0.1 RBM27 RNU7-180P RF00066-160 ENSG00000275740 POU4F3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU7-180P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU7-180P Gene

Genomic Locations for RNU7-180P Gene
chr5:146,245,191-146,245,253
(GRCh38/hg38)
Size:
63 bases
Orientation:
Minus strand
chr5:145,624,754-145,624,816
(GRCh37/hg19)
Size:
63 bases
Orientation:
Minus strand

Genomic View for RNU7-180P Gene

Genes around RNU7-180P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-180P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-180P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-180P Gene

Proteins for RNU7-180P Gene

Post-translational modifications for RNU7-180P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-180P Gene

Domains & Families for RNU7-180P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU7-180P Gene

Function for RNU7-180P Gene

Phenotypes From GWAS Catalog for RNU7-180P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-180P Gene

Localization for RNU7-180P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-180P Gene

Pathways & Interactions for RNU7-180P Gene

PathCards logo

SuperPathways for RNU7-180P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU7-180P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU7-180P Gene

Drugs & Compounds for RNU7-180P Gene

No Compound Related Data Available

Transcripts for RNU7-180P Gene

mRNA/cDNA for RNU7-180P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-180P Gene

No ASD Table

Relevant External Links for RNU7-180P Gene

GeneLoc Exon Structure for
RNU7-180P

Expression for RNU7-180P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-180P Gene

Orthologs for RNU7-180P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU7-180P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U7 31
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia U7 31
  • 66 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Gm22836 31
  • 61 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U7 31
  • 56 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves U7 31
  • 61 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia U7 31
  • 58 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U7 31
  • 66 (a)
OneToMany
Species where no ortholog for RNU7-180P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU7-180P Gene

ENSEMBL:
Gene Tree for RNU7-180P (if available)
TreeFam:
Gene Tree for RNU7-180P (if available)

Paralogs for RNU7-180P Gene

No data available for Paralogs for RNU7-180P Gene

Variants for RNU7-180P Gene

Additional Variant Information for RNU7-180P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-180P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-180P Gene

Disorders for RNU7-180P Gene

No disorders were found for RNU7-180P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-180P Gene

Publications for RNU7-180P Gene

No publications were found for RNU7-180P Gene.

No data available for Mastermind for RNU7-180P Gene

Products for RNU7-180P Gene

Sources for RNU7-180P Gene