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Aliases for RNU7-179P Gene

Subcategory (RNA class) for RNU7-179P Gene

snRNA

Aliases for RNU7-179P Gene

  • RNA, U7 Small Nuclear 179 Pseudogene 2 3 5

External Ids for RNU7-179P Gene

ORGUL Members for RNU7-179P Gene

Previous GeneCards Identifiers for RNU7-179P Gene

  • GC01M015940

Summaries for RNU7-179P Gene

GeneCards Summary for RNU7-179P Gene

RNU7-179P (RNA, U7 Small Nuclear 179 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU7-179P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U7 small nuclear RNA: Animal histone pre-mRNAs are spliced by a different mechanism than nuclear pre-mRNAs and self-splicing introns. This processing involves the U7 snRNP, which contains only one RNA species: U7. The 5' end of U7 RNA is thought to base-pair to a conserved spacer element downstream of the cleavage site in histone pre-mRNA. This family contains a number of annotated U7 pseudogenes.

View fRNAdb secondary structures for RNU7-179P

Additional gene information for RNU7-179P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU7-179P Gene

Genomics for RNU7-179P Gene

GeneHancer (GH) Regulatory Elements for RNU7-179P Gene

Promoters and enhancers for RNU7-179P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I015696 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.8 -89.4 -89416 1.9 PKNOX1 BACH1 MAX EBF1 BMI1 IRF4 RELA ZNF121 POLR2A ATF7 SLC25A34 ENSG00000237938 RSC1A1 FBLIM1 RNU7-179P SCARNA21B PLEKHM2 FAM131C PIR54516 PIR59281
GH01I015578 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.5 +28.2 28223 2.9 ZFHX2 POLR2A BCL6B MNT MLLT1 EGR2 SCARNA21B RNU7-179P PLEKHM2 RSC1A1 AGMAT PIR62159 DNAJC16
GH01I015629 Enhancer 0.9 ENCODE dbSUPER 11.2 -22.2 -22172 1.1 ZNF571 NFIB ZNF195 ZNF662 SALL2 ZNF491 MITF NFIC ZNF776 LCORL TMEM51-AS1 SLC25A34 NBPF1 SPEN CROCCP3 RSC1A1 PLEKHM2 RNU7-179P ENSG00000237938 SCARNA21B
GH01I015631 Enhancer 0.6 dbSUPER 11.2 -23.2 -23211 0.7 ZNF571 NFIB ZNF195 ZNF662 SALL2 ZNF491 NFIC ZNF776 LCORL ZNF544 TMEM51-AS1 SLC25A34 NBPF1 SPEN CROCCP3 RSC1A1 AGMAT PLEKHM2 RNU7-179P ENSG00000237938
GH01I015700 Enhancer 0.2 dbSUPER 10.8 -92.4 -92394 0.9 SLC25A34 ENSG00000237938 RSC1A1 FBLIM1 RNU7-179P SCARNA21B PLEKHM2 PIR54516 PIR59281
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-179P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-179P Gene

Genomic Locations for RNU7-179P Gene
chr1:15,608,078-15,608,145
(GRCh38/hg38)
Size:
68 bases
Orientation:
Minus strand
chr1:15,934,573-15,934,640
(GRCh37/hg19)

Genomic View for RNU7-179P Gene

Genes around RNU7-179P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-179P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-179P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for RNU7-179P Gene

ORGUL Member Location for RNU7-179P gene

No data available for RefSeq DNA sequence for RNU7-179P Gene

Proteins for RNU7-179P Gene

Post-translational modifications for RNU7-179P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-179P Gene

Domains & Families for RNU7-179P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-179P Gene

Function for RNU7-179P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-179P Gene

Localization for RNU7-179P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-179P Gene

Pathways & Interactions for RNU7-179P Gene

SuperPathways for RNU7-179P Gene

No Data Available

Interacting Proteins for RNU7-179P Gene

Gene Ontology (GO) - Biological Process for RNU7-179P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-179P Gene

Drugs & Compounds for RNU7-179P Gene

No Compound Related Data Available

Transcripts for RNU7-179P Gene

fRNAdb Secondary structures for RNU7-179P Gene

  • FR264192

mRNA/cDNA for RNU7-179P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-179P Gene

No ASD Table

Relevant External Links for RNU7-179P Gene

GeneLoc Exon Structure for
RNU7-179P
ECgene alternative splicing isoforms for
RNU7-179P

Expression for RNU7-179P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-179P Gene

Orthologs for RNU7-179P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU7-179P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U7 34
  • 62 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U7 34
  • 58 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm26010 34
  • 51 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U7 34
  • 56 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U7 34
  • 58 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U7 34
  • 63 (a)
OneToMany
Species where no ortholog for RNU7-179P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU7-179P Gene

ENSEMBL:
Gene Tree for RNU7-179P (if available)
TreeFam:
Gene Tree for RNU7-179P (if available)

Paralogs for RNU7-179P Gene

No data available for Paralogs for RNU7-179P Gene

Variants for RNU7-179P Gene

Additional Variant Information for RNU7-179P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-179P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-179P Gene

Disorders for RNU7-179P Gene

No disorders were found for RNU7-179P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-179P Gene

Publications for RNU7-179P Gene

  1. 3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA. (PMID: 7937126) Spycher C … Schümperli D (Nucleic acids research 1994) 1
  2. Identification of the human U7 snRNP as one of several factors involved in the 3' end maturation of histone premessenger RNA's. (PMID: 2825355) Mowry KL … Steitz JA (Science (New York, N.Y.) 1987) 1

Products for RNU7-179P Gene

Sources for RNU7-179P Gene

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