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Aliases for RNU7-172P Gene

Aliases for RNU7-172P Gene

  • RNA, U7 Small Nuclear 172 Pseudogene 2 3 5

External Ids for RNU7-172P Gene

Previous GeneCards Identifiers for RNU7-172P Gene

  • GC02M054395

Summaries for RNU7-172P Gene

GeneCards Summary for RNU7-172P Gene

RNU7-172P (RNA, U7 Small Nuclear 172 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-172P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU7-172P Gene

Genomics for RNU7-172P Gene

GeneHancer (GH) Regulatory Elements for RNU7-172P Gene

Promoters and enhancers for RNU7-172P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I054041 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +123.4 123364 3.6 FOXA2 MLX ARID4B DMAP1 ZNF48 SLC30A9 CBX5 ATF7 FOS SP5 ACYP2 RNU7-172P EML6 TSPYL6 HMGB1P31 GPR75 RPL21P30
GH02I054629 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9.7 -466.6 -466554 9 HDGF FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 YBX1 IRF4 ETS1 SPTBN1 EML6 RNU7-172P PRORSD1P GC02M054633 GC02M054634 GC02M054617
GH02I054468 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.6 -303.6 -303645 4.5 NFIB ZFP64 INSM2 ARID4B BATF ZNF2 ZNF335 ZNF366 RCOR1 IKZF2 SPTBN1 RNU7-172P EML6 RTN4 GC02P054478
GH02I054523 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9.7 -357.6 -357623 2.6 HDGF CTCF FOXA2 JUN EBF1 BATF FOSL1 GATA3 ATF7 IKZF2 EML6 ENSG00000203327 PRORSD1P RPS27A SPTBN1 CLHC1 ACYP2 RNU7-172P RPL23AP32 GC02P054516
GH02I054530 Enhancer 1.4 Ensembl ENCODE dbSUPER 9.2 -366.1 -366094 4.8 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 BRCA1 ETS1 YY1 ATF7 EML6 ACYP2 RNU7-172P SPTBN1 CLHC1 GC02M054535 RPL23AP32 ENSG00000228108 LOC105374640
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-172P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-172P Gene

Genomic Locations for RNU7-172P Gene
chr2:54,166,944-54,167,007
(GRCh38/hg38)
Size:
64 bases
Orientation:
Minus strand
chr2:54,394,081-54,394,144
(GRCh37/hg19)

Genomic View for RNU7-172P Gene

Genes around RNU7-172P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-172P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-172P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-172P Gene

Proteins for RNU7-172P Gene

Post-translational modifications for RNU7-172P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-172P Gene

Domains & Families for RNU7-172P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-172P Gene

Function for RNU7-172P Gene

Phenotypes From GWAS Catalog for RNU7-172P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-172P Gene

Localization for RNU7-172P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-172P Gene

Pathways & Interactions for RNU7-172P Gene

SuperPathways for RNU7-172P Gene

No Data Available

Interacting Proteins for RNU7-172P Gene

Gene Ontology (GO) - Biological Process for RNU7-172P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-172P Gene

Drugs & Compounds for RNU7-172P Gene

No Compound Related Data Available

Transcripts for RNU7-172P Gene

mRNA/cDNA for RNU7-172P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-172P Gene

No ASD Table

Relevant External Links for RNU7-172P Gene

GeneLoc Exon Structure for
RNU7-172P
ECgene alternative splicing isoforms for
RNU7-172P

Expression for RNU7-172P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU7-172P Gene

genes like me logo Genes that share expression patterns with RNU7-172P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-172P Gene

Orthologs for RNU7-172P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-172P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 100 (a)
OneToOne
Species where no ortholog for RNU7-172P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-172P Gene

ENSEMBL:
Gene Tree for RNU7-172P (if available)
TreeFam:
Gene Tree for RNU7-172P (if available)

Paralogs for RNU7-172P Gene

No data available for Paralogs for RNU7-172P Gene

Variants for RNU7-172P Gene

Additional Variant Information for RNU7-172P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-172P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-172P Gene

Disorders for RNU7-172P Gene

No disorders were found for RNU7-172P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-172P Gene

Publications for RNU7-172P Gene

No publications were found for RNU7-172P Gene.

Products for RNU7-172P Gene

Sources for RNU7-172P Gene

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