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Aliases for RNU7-171P Gene

Subcategory (RNA class) for RNU7-171P Gene

snRNA

Aliases for RNU7-171P Gene

  • RNA, U7 Small Nuclear 171 Pseudogene 2 3 5

External Ids for RNU7-171P Gene

ORGUL Members for RNU7-171P Gene

Previous GeneCards Identifiers for RNU7-171P Gene

  • GC09P131308

Summaries for RNU7-171P Gene

GeneCards Summary for RNU7-171P Gene

RNU7-171P (RNA, U7 Small Nuclear 171 Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU7-171P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U7 small nuclear RNA: Animal histone pre-mRNAs are spliced by a different mechanism than nuclear pre-mRNAs and self-splicing introns. This processing involves the U7 snRNP, which contains only one RNA species: U7. The 5' end of U7 RNA is thought to base-pair to a conserved spacer element downstream of the cleavage site in histone pre-mRNA. This family contains a number of annotated U7 pseudogenes.

Additional gene information for RNU7-171P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU7-171P Gene

Genomics for RNU7-171P Gene

GeneHancer (GH) Regulatory Elements for RNU7-171P Gene

Promoters and enhancers for RNU7-171P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I128633 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.5 +92.2 92191 4.7 PKNOX1 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 PKN3 ODF2 LOC100129352 LOC100506100 ZDHHC12 LOC101929270 RNU7-171P KYAT1 LRRC8A TBC1D13
GH09I128732 Enhancer 1.2 Ensembl ENCODE 10 +189.4 189405 1 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF48 YY1 SLC30A9 ZER1 PKN3 TBC1D13 PHYHD1 LOC101929270 RNU7-171P LOC100506100 ENSG00000203286 GC09M128706
GH09I128438 Enhancer 1.1 Ensembl ENCODE 10.4 -105.0 -104996 0.8 HDGF ELF3 RB1 NFIB ARID4B SIN3A ZNF2 ZNF48 RAD21 ARID2 ENSG00000273186 SLC27A4 TMSB4XP4 LOC101929270 SPTAN1 RNU7-171P PKN3 LOC100506100 ZDHHC12 GC09P128443
GH09I128628 Enhancer 0.8 ENCODE dbSUPER 10.9 +84.5 84532 0.9 KLF1 PKNOX1 RXRA SP5 ZNF10 RAD21 HIC1 POLR2A PRDM10 ZNF24 LOC101929270 RNU7-171P CERCAM ENSG00000280758 ENSG00000280474 SPTAN1
GH09I128607 Enhancer 0.7 ENCODE 11 +63.8 63758 1.3 FOXA2 MAX RAD21 YY1 SMC3 RCOR1 TCF7L2 PAF1 RXRA NFYA SPTAN1 LOC101929270 PKN3 RNU7-171P ZDHHC12 LOC100506100 ZER1 ENSG00000280474 ENSG00000280758
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU7-171P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-171P Gene

Genomic Locations for RNU7-171P Gene
chr9:128,543,916-128,543,977
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand
chr9:131,306,195-131,306,256
(GRCh37/hg19)

Genomic View for RNU7-171P Gene

Genes around RNU7-171P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-171P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-171P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-171P Gene

ORGUL Member Location for RNU7-171P Gene

ORGUL Member Location for RNU7-171P gene

Proteins for RNU7-171P Gene

Post-translational modifications for RNU7-171P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-171P Gene

Domains & Families for RNU7-171P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU7-171P Gene

Function for RNU7-171P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-171P Gene

Localization for RNU7-171P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-171P Gene

Pathways & Interactions for RNU7-171P Gene

SuperPathways for RNU7-171P Gene

No Data Available

Interacting Proteins for RNU7-171P Gene

Gene Ontology (GO) - Biological Process for RNU7-171P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-171P Gene

Drugs & Compounds for RNU7-171P Gene

No Compound Related Data Available

Transcripts for RNU7-171P Gene

mRNA/cDNA for RNU7-171P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-171P Gene

No ASD Table

Relevant External Links for RNU7-171P Gene

GeneLoc Exon Structure for
RNU7-171P
ECgene alternative splicing isoforms for
RNU7-171P

Expression for RNU7-171P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-171P Gene

Orthologs for RNU7-171P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU7-171P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U7 34
  • 97 (a)
OneToOne
Species where no ortholog for RNU7-171P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU7-171P Gene

ENSEMBL:
Gene Tree for RNU7-171P (if available)
TreeFam:
Gene Tree for RNU7-171P (if available)

Paralogs for RNU7-171P Gene

No data available for Paralogs for RNU7-171P Gene

Variants for RNU7-171P Gene

Additional Variant Information for RNU7-171P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-171P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-171P Gene

Disorders for RNU7-171P Gene

No disorders were found for RNU7-171P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU7-171P Gene

Publications for RNU7-171P Gene

  1. 3' end processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA. (PMID: 7937126) Spycher C … Schümperli D (Nucleic acids research 1994) 1
  2. Identification of the human U7 snRNP as one of several factors involved in the 3' end maturation of histone premessenger RNA's. (PMID: 2825355) Mowry KL … Steitz JA (Science (New York, N.Y.) 1987) 1

Products for RNU7-171P Gene

Sources for RNU7-171P Gene

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