Aliases for RNU7-12P Gene

Aliases for RNU7-12P Gene

  • RNA, U7 Small Nuclear 12 Pseudogene 2 3 5
  • RNA, U7 Small Nuclear 100 Pseudogene 2 3
  • RNA, Small Nuclear U7.12 Pseudogene 3
  • RNU7-100P 3
  • U7.12 3

External Ids for RNU7-12P Gene

Previous HGNC Symbols for RNU7-12P Gene

  • RNU7-100P

Previous GeneCards Identifiers for RNU7-12P Gene

  • GC10U900988
  • GC10M027521

Summaries for RNU7-12P Gene

GeneCards Summary for RNU7-12P Gene

RNU7-12P (RNA, U7 Small Nuclear 12 Pseudogene) is a Pseudogene.

Additional gene information for RNU7-12P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU7-12P Gene

Genomics for RNU7-12P Gene

GeneHancer (GH) Regulatory Elements for RNU7-12P Gene

Promoters and enhancers for RNU7-12P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J027229 Enhancer 0.8 ENCODE dbSUPER 750.6 +1.7 1717 1.9 FOXA1 SP1 RXRA FOXA2 JUND ZBTB33 GABPA HNF4A HNF4G REST RF00066-021 RNU7-12P MASTL ACBD5 RF00004-014 RNU2-24P
GH10J027238 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -9.2 -9219 5.3 PPP1R10 SIN3A ZBTB40 CTCF SIX5 ZBTB6 FOXA1 SMARCE1 POLR2A HDAC2 ACBD5 ENSG00000262412 MASTL ANKRD26 ABI1 YME1L1 RNU7-12P RF00066-021
GH10J027234 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.6 -2.0 -2027 0.9 ZNF121 ELF3 ZNF384 TCF7L2 FOXA2 WT1 FOSL2 ZNF664 FEZF1 PRDM6 MASTL YME1L1 FAM238B RF00066-021 RNU7-12P ACBD5
GH10J027235 Enhancer 0.4 Ensembl dbSUPER 0.6 -2.8 -2785 0.2 ZNF121 MASTL YME1L1 RF00066-021 RNU7-12P ACBD5
GH10J027224 Enhancer 0.5 dbSUPER 0.4 +7.8 7842 0.6 CTCF RAD21 ZNF121 TRIM22 ZNF18 MASTL YME1L1 ANKRD26 RNU7-12P RF00066-021 ACBD5 RNU2-24P RF00004-014
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU7-12P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU7-12P Gene

Genomic Locations for RNU7-12P Gene
chr10:27,232,255-27,232,316
(GRCh38/hg38)
Size:
62 bases
Orientation:
Minus strand
chr10:27,521,184-27,521,245
(GRCh37/hg19)
Size:
62 bases
Orientation:
Minus strand

Genomic View for RNU7-12P Gene

Genes around RNU7-12P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU7-12P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU7-12P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU7-12P Gene

Proteins for RNU7-12P Gene

Post-translational modifications for RNU7-12P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU7-12P Gene

Domains & Families for RNU7-12P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU7-12P Gene

Function for RNU7-12P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU7-12P Gene

Localization for RNU7-12P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU7-12P Gene

Pathways & Interactions for RNU7-12P Gene

PathCards logo

SuperPathways for RNU7-12P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU7-12P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU7-12P Gene

Drugs & Compounds for RNU7-12P Gene

No Compound Related Data Available

Transcripts for RNU7-12P Gene

mRNA/cDNA for RNU7-12P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU7-12P Gene

No ASD Table

Relevant External Links for RNU7-12P Gene

GeneLoc Exon Structure for
RNU7-12P
ECgene alternative splicing isoforms for
RNU7-12P

Expression for RNU7-12P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU7-12P Gene

genes like me logo Genes that share expression patterns with RNU7-12P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU7-12P Gene

Orthologs for RNU7-12P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU7-12P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U7 33
  • 85 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia U7 33
  • 73 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22841 33
  • 71 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U7 33
  • 70 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U7 33
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U7 33
  • 70 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U7 33
  • 64 (a)
OneToMany
Species where no ortholog for RNU7-12P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU7-12P Gene

ENSEMBL:
Gene Tree for RNU7-12P (if available)
TreeFam:
Gene Tree for RNU7-12P (if available)

Paralogs for RNU7-12P Gene

No data available for Paralogs for RNU7-12P Gene

Variants for RNU7-12P Gene

Additional Variant Information for RNU7-12P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU7-12P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU7-12P Gene

Disorders for RNU7-12P Gene

Additional Disease Information for RNU7-12P

Genetic Association Database
(GAD)

No disorders were found for RNU7-12P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU7-12P Gene

Publications for RNU7-12P Gene

  1. U7 snRNAs: a computational survey. (PMID: 18267300) Marz M … Stadler PF (Genomics, proteomics & bioinformatics 2007) 2 3 56

Products for RNU7-12P Gene

Sources for RNU7-12P Gene