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Aliases for RNU6ATAC38P Gene

Subcategory (RNA class) for RNU6ATAC38P Gene

snRNA

Aliases for RNU6ATAC38P Gene

  • RNA, U6atac Small Nuclear 38, Pseudogene 2 3 5

External Ids for RNU6ATAC38P Gene

ORGUL Members for RNU6ATAC38P Gene

Previous GeneCards Identifiers for RNU6ATAC38P Gene

  • GC20P044410

Summaries for RNU6ATAC38P Gene

GeneCards Summary for RNU6ATAC38P Gene

RNU6ATAC38P (RNA, U6atac Small Nuclear 38, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6ATAC38P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC38P Gene

Genomics for RNU6ATAC38P Gene

GeneHancer (GH) Regulatory Elements for RNU6ATAC38P Gene

Promoters and enhancers for RNU6ATAC38P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I045777 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +2.0 1995 5.6 PKNOX1 ATF1 NEUROD1 SIN3A BRCA1 ATF7 FOS KLF13 DEK REST RNU6ATAC38P GC20P045779 WFDC3 DNTTIP1 WFDC13
GH20I045322 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.1 -455.1 -455105 1.6 PKNOX1 ATF1 ARID4B SIN3A ZNF48 YY1 ZNF766 ARID2 ATF7 CAVIN1 TRV-CAC14-1 SYS1 SYS1-DBNDD2 PIGT ENSG00000237464 RNU6ATAC38P DNTTIP1 WFDC3 PABPC1L ENSG00000275894
GH20I045293 Enhancer 1.1 Ensembl ENCODE 9.5 -485.0 -484972 1.4 ATF1 SIN3A ZNF143 ATF7 DEK REST SMARCB1 SSRP1 MIER3 GMEB1 SLPI WFDC5 RNU6ATAC38P WFDC12 MATN4 RBPJL
GH20I045319 Enhancer 1 Ensembl ENCODE 10.1 -459.1 -459109 0.9 HDAC1 CTCF CEBPG IRF4 RAD21 RFX5 ZNF335 ZNF664 FOXM1 POLR2A PIGT ENSG00000237464 RNU6ATAC38P DNTTIP1 WFDC3 WFDC12 PIR62059 TRV-CAC14-1 RBPJL
GH20I045311 Enhancer 1 Ensembl ENCODE 9.4 -466.6 -466635 1.2 RB1 ZNF529 SIN3A ZNF2 ZNF48 RAD21 ZNF121 ZNF143 SMARCA5 ZNF263 PIGT RNU6ATAC38P SLPI MATN4 PIR62059 RBPJL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6ATAC38P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6ATAC38P Gene

Genomic Locations for RNU6ATAC38P Gene
chr20:45,778,698-45,778,823
(GRCh38/hg38)
Size:
126 bases
Orientation:
Plus strand
chr20:44,407,337-44,407,462
(GRCh37/hg19)

Genomic View for RNU6ATAC38P Gene

Genes around RNU6ATAC38P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC38P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC38P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC38P Gene

Proteins for RNU6ATAC38P Gene

Post-translational modifications for RNU6ATAC38P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC38P Gene

Domains & Families for RNU6ATAC38P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC38P Gene

Function for RNU6ATAC38P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC38P Gene

Localization for RNU6ATAC38P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC38P Gene

Pathways & Interactions for RNU6ATAC38P Gene

SuperPathways for RNU6ATAC38P Gene

No Data Available

Interacting Proteins for RNU6ATAC38P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC38P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC38P Gene

Drugs & Compounds for RNU6ATAC38P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC38P Gene

mRNA/cDNA for RNU6ATAC38P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC38P Gene

No ASD Table

Relevant External Links for RNU6ATAC38P Gene

GeneLoc Exon Structure for
RNU6ATAC38P
ECgene alternative splicing isoforms for
RNU6ATAC38P

Expression for RNU6ATAC38P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC38P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC38P Gene:

RNU6ATAC38P
genes like me logo Genes that share expression patterns with RNU6ATAC38P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC38P Gene

Orthologs for RNU6ATAC38P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC38P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6atac 34 34
  • 87 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6atac 34
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6atac 34
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 77 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U6atac 34
  • 75 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 34
  • 69 (a)
OneToMany
Species where no ortholog for RNU6ATAC38P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC38P Gene

ENSEMBL:
Gene Tree for RNU6ATAC38P (if available)
TreeFam:
Gene Tree for RNU6ATAC38P (if available)

Paralogs for RNU6ATAC38P Gene

No data available for Paralogs for RNU6ATAC38P Gene

Variants for RNU6ATAC38P Gene

Additional Variant Information for RNU6ATAC38P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC38P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC38P Gene

Disorders for RNU6ATAC38P Gene

No disorders were found for RNU6ATAC38P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC38P Gene

Publications for RNU6ATAC38P Gene

No publications were found for RNU6ATAC38P Gene.

Products for RNU6ATAC38P Gene

Sources for RNU6ATAC38P Gene

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