Aliases for RNU6ATAC31P Gene

Aliases for RNU6ATAC31P Gene

  • RNA, U6atac Small Nuclear 31, Pseudogene 2 3 5
  • RNU6ATAC31P 5

External Ids for RNU6ATAC31P Gene

Previous GeneCards Identifiers for RNU6ATAC31P Gene

  • GC04M089130

Summaries for RNU6ATAC31P Gene

GeneCards Summary for RNU6ATAC31P Gene

RNU6ATAC31P (RNA, U6atac Small Nuclear 31, Pseudogene) is a Pseudogene.

Additional gene information for RNU6ATAC31P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6ATAC31P Gene

Genomics for RNU6ATAC31P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6ATAC31P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J088204 Enhancer 0.3 Ensembl 600.7 +1.8 1751 1.6 NR2F2 RF00619-030 RNU6ATAC31P piR-43105-497 PPM1K-DT ENSG00000249755 ABCG2 RF00026-803 RNU6-818P PKD2
GH04J088208 Enhancer 0.2 Ensembl 600.7 -1.8 -1849 0.4 RF00619-030 RNU6ATAC31P PPM1K-DT ENSG00000251285 lnc-PPM1K-2 ABCG2 PKD2
GH04J088157 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 11 +48.1 48054 3.4 CREB1 GATAD2A PRDM10 NFKBIZ KDM1A ZNF692 TARDBP PRDM1 ZIC2 RBFOX2 ABCG2 HSALNG0035741 RNU6-818P RNU6ATAC31P piR-30444-218 PKD2
GH04J088104 Enhancer 1.1 Ensembl ENCODE 11 +99.2 99193 5.9 GATAD2A PRDM10 REST ZNF629 SOX13 NFKBIZ ZNF692 RCOR2 FOXA1 RXRB RNU6-818P RNU6ATAC31P PKD2 SPP1 HSP90AB3P lnc-PKD2-1 piR-60885-094 ABCG2
GH04J088230 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.3 -24.8 -24822 1.8 NFIC GATA2 ABCG2 PPM1K-DT PPM1K RNU6-112P RNU6ATAC31P ENSG00000249755 HERC3 PIGY PYURF RF00026-804
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6ATAC31P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6ATAC31P Gene

Genomic Locations for RNU6ATAC31P Gene
chr4:88,206,427-88,206,552
(GRCh38/hg38)
Size:
126 bases
Orientation:
Minus strand
chr4:89,127,579-89,127,704
(GRCh37/hg19)
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC31P Gene

Genes around RNU6ATAC31P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC31P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC31P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC31P Gene

Proteins for RNU6ATAC31P Gene

Post-translational modifications for RNU6ATAC31P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC31P Gene

Domains & Families for RNU6ATAC31P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6ATAC31P Gene

Function for RNU6ATAC31P Gene

Phenotypes From GWAS Catalog for RNU6ATAC31P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC31P Gene

Localization for RNU6ATAC31P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC31P Gene

Pathways & Interactions for RNU6ATAC31P Gene

PathCards logo

SuperPathways for RNU6ATAC31P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6ATAC31P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6ATAC31P Gene

Drugs & Compounds for RNU6ATAC31P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC31P Gene

mRNA/cDNA for RNU6ATAC31P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC31P Gene

No ASD Table

Relevant External Links for RNU6ATAC31P Gene

GeneLoc Exon Structure for
RNU6ATAC31P

Expression for RNU6ATAC31P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6ATAC31P Gene

genes like me logo Genes that share expression patterns with RNU6ATAC31P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC31P Gene

Orthologs for RNU6ATAC31P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC31P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6atac 31
  • 99 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia U6atac 31 31 31 31 31 31 31 31 31
  • 79 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 31
  • 78 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia U6atac 31
  • 75 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia U6atac 31 31 31 31 31 31 31 31
  • 72 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves U6atac 31
  • 71 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea U6atac 31
  • 65 (a)
OneToMany
Species where no ortholog for RNU6ATAC31P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6ATAC31P Gene

ENSEMBL:
Gene Tree for RNU6ATAC31P (if available)
TreeFam:
Gene Tree for RNU6ATAC31P (if available)

Paralogs for RNU6ATAC31P Gene

No data available for Paralogs for RNU6ATAC31P Gene

Variants for RNU6ATAC31P Gene

Additional Variant Information for RNU6ATAC31P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC31P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC31P Gene

Disorders for RNU6ATAC31P Gene

No disorders were found for RNU6ATAC31P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC31P Gene

Publications for RNU6ATAC31P Gene

No publications were found for RNU6ATAC31P Gene.

No data available for Mastermind for RNU6ATAC31P Gene

Products for RNU6ATAC31P Gene

Sources for RNU6ATAC31P Gene