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Aliases for RNU6ATAC31P Gene

Subcategory (RNA class) for RNU6ATAC31P Gene

snRNA

Aliases for RNU6ATAC31P Gene

  • RNA, U6atac Small Nuclear 31, Pseudogene 2 3 5

External Ids for RNU6ATAC31P Gene

ORGUL Members for RNU6ATAC31P Gene

Previous GeneCards Identifiers for RNU6ATAC31P Gene

  • GC04M089130

Summaries for RNU6ATAC31P Gene

GeneCards Summary for RNU6ATAC31P Gene

RNU6ATAC31P (RNA, U6atac Small Nuclear 31, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6ATAC31P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC31P Gene

Genomics for RNU6ATAC31P Gene

Regulatory Elements for RNU6ATAC31P Gene

Enhancers for RNU6ATAC31P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H088106 1.2 Ensembl ENCODE 11 +98.3 98319 4 PKNOX1 FOXA2 ATF1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 SP5 RNU6-818P RNU6ATAC31P SPP1 HSP90AB3P PKD2 GC04P088089 RPL31P24
GH04H088026 1.1 Ensembl ENCODE dbSUPER 11.1 +178.0 177964 3 STAT1 USF2 CEBPB CEBPG GATA3 ZNF766 POLR2A ZNF585B FOS PKD2 RNU6ATAC31P RNU6-818P PIGY PYURF LOC100129137 HERC3 GC04P088089
GH04H088016 1.1 Ensembl ENCODE dbSUPER 10.3 +188.7 188745 3 JUN CEBPB ZNF175 EBF1 CEBPG ATF2 JUND POLR2A ATF7 FOS SPP1 RNU6ATAC31P HERC3 LOC100129137 PIGY PYURF PKD2 GC04P088089
GH04H088157 1 ENCODE 11 +47.6 47606 2 ATF1 ARID4B SIN3A DMAP1 ZNF2 YY1 TCF12 GLIS2 FOS MXD4 RNU6-818P RNU6ATAC31P ABCG2 RPL31P24 GC04P088089
GH04H088142 0.9 ENCODE 10.9 +60.3 60291 6 PKNOX1 NFIB ARNT ZNF133 FEZF1 ZNF366 SCRT2 RCOR1 FOS ZNF362 RNU6-818P RNU6ATAC31P LOC105369192 ABCG2 RPL31P24 GC04P088089
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNU6ATAC31P on UCSC Golden Path with GeneCards custom track

Genomic Location for RNU6ATAC31P Gene

Chromosome:
4
Start:
88,206,427 bp from pter
End:
88,206,552 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU6ATAC31P Gene

Genes around RNU6ATAC31P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC31P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC31P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC31P Gene

Proteins for RNU6ATAC31P Gene

Post-translational modifications for RNU6ATAC31P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC31P Gene

Domains & Families for RNU6ATAC31P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC31P Gene

Function for RNU6ATAC31P Gene

Phenotypes From GWAS Catalog for RNU6ATAC31P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC31P Gene

Localization for RNU6ATAC31P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC31P Gene

Pathways & Interactions for RNU6ATAC31P Gene

SuperPathways for RNU6ATAC31P Gene

No Data Available

Interacting Proteins for RNU6ATAC31P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC31P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC31P Gene

Drugs & Compounds for RNU6ATAC31P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC31P Gene

mRNA/cDNA for RNU6ATAC31P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC31P Gene

No ASD Table

Relevant External Links for RNU6ATAC31P Gene

GeneLoc Exon Structure for
RNU6ATAC31P
ECgene alternative splicing isoforms for
RNU6ATAC31P

Expression for RNU6ATAC31P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC31P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC31P Gene:

RNU6ATAC31P
genes like me logo Genes that share expression patterns with RNU6ATAC31P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC31P Gene

Orthologs for RNU6ATAC31P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC31P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 34 34 34 34 34 34 34 34 34
  • 87 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 34 34 34 34 34 34 34 34
  • 78 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 78 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6atac 34
  • 75 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U6atac 34
  • 71 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 34
  • 65 (a)
OneToMany
Species where no ortholog for RNU6ATAC31P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC31P Gene

ENSEMBL:
Gene Tree for RNU6ATAC31P (if available)
TreeFam:
Gene Tree for RNU6ATAC31P (if available)

Paralogs for RNU6ATAC31P Gene

No data available for Paralogs for RNU6ATAC31P Gene

Variants for RNU6ATAC31P Gene

Relevant External Links for RNU6ATAC31P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC31P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC31P Gene

Disorders for RNU6ATAC31P Gene

No disorders were found for RNU6ATAC31P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC31P Gene

Publications for RNU6ATAC31P Gene

No publications were found for RNU6ATAC31P Gene.

Products for RNU6ATAC31P Gene

Sources for RNU6ATAC31P Gene

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