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Aliases for RNU6ATAC13P Gene

Subcategory (RNA class) for RNU6ATAC13P Gene


Aliases for RNU6ATAC13P Gene

  • RNA, U6atac Small Nuclear 13, Pseudogene 2 3 5

External Ids for RNU6ATAC13P Gene

ORGUL Members for RNU6ATAC13P Gene

Previous GeneCards Identifiers for RNU6ATAC13P Gene

  • GC04P171814

Summaries for RNU6ATAC13P Gene

GeneCards Summary for RNU6ATAC13P Gene

RNU6ATAC13P (RNA, U6atac Small Nuclear 13, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6ATAC13P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6atac minor spliceosomal RNA: U6atac is an essential component of the minor U12-type spliceosome complex which is required for removal of the rarer class of eukaryotic introns (AT-AC, U12-type) [1]. U6atac snRNA is proposed to form a base-paired complex with another spliceosomal RNA U4atac via two stem loop regions. These interacting stem loops have been shown to be required for in vivo splicing [2]. U6atac is the functional analog of U6 (Rfam:RF00026) in the major U2-type spliceosomal complex [2].

Additional gene information for RNU6ATAC13P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6ATAC13P Gene

Genomics for RNU6ATAC13P Gene

GeneHancer (GH) Regulatory Elements for RNU6ATAC13P Gene

Promoters and enhancers for RNU6ATAC13P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I170872 Enhancer 0.3 ENCODE 0.4 -18.5 -18462 0.2 POLR2A GC04P170853 GC04P170854 RNU6ATAC13P
GH04I170991 Enhancer 0.5 ENCODE 0.2 +99.7 99688 0.1 CTCF ZNF654 ZNF143 RAD21 LINC02431 RNU6ATAC13P
GH04I171022 Enhancer 0.4 ENCODE 0.1 +131.4 131445 1.2 MAX POU5F1 LINC02431 RNU6ATAC13P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6ATAC13P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6ATAC13P Gene

Genomic Locations for RNU6ATAC13P Gene
131 bases
Plus strand

Genomic View for RNU6ATAC13P Gene

Genes around RNU6ATAC13P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC13P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC13P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC13P Gene

ORGUL Member Location for RNU6ATAC13P Gene

ORGUL Member Location for RNU6ATAC13P gene

Proteins for RNU6ATAC13P Gene

Post-translational modifications for RNU6ATAC13P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC13P Gene

Domains & Families for RNU6ATAC13P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC13P Gene

Function for RNU6ATAC13P Gene

Phenotypes From GWAS Catalog for RNU6ATAC13P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC13P Gene

Localization for RNU6ATAC13P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC13P Gene

Pathways & Interactions for RNU6ATAC13P Gene

SuperPathways for RNU6ATAC13P Gene

No Data Available

Interacting Proteins for RNU6ATAC13P Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC13P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC13P Gene

Drugs & Compounds for RNU6ATAC13P Gene

No Compound Related Data Available

Transcripts for RNU6ATAC13P Gene

mRNA/cDNA for RNU6ATAC13P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC13P Gene

No ASD Table

Relevant External Links for RNU6ATAC13P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU6ATAC13P Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC13P Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC13P Gene

Orthologs for RNU6ATAC13P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC13P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U6atac 34
  • 97 (a)
(Mus musculus)
Mammalia Gm24274 34
  • 60 (a)
(Canis familiaris)
Mammalia U6atac 34
  • 58 (a)
(Bos Taurus)
Mammalia U6atac 34
  • 56 (a)
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 55 (a)
(Monodelphis domestica)
Mammalia U6atac 34
  • 54 (a)
(Anolis carolinensis)
Reptilia U6atac 34
  • 59 (a)
(Danio rerio)
Actinopterygii U6atac 34
  • 53 (a)
Species where no ortholog for RNU6ATAC13P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6ATAC13P Gene

Gene Tree for RNU6ATAC13P (if available)
Gene Tree for RNU6ATAC13P (if available)

Paralogs for RNU6ATAC13P Gene

No data available for Paralogs for RNU6ATAC13P Gene

Variants for RNU6ATAC13P Gene

Additional Variant Information for RNU6ATAC13P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6ATAC13P Gene

Disorders for RNU6ATAC13P Gene

No disorders were found for RNU6ATAC13P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6ATAC13P Gene

Publications for RNU6ATAC13P Gene

  1. Evolutionary conservation of minor U12-type spliceosome between plants and humans. (PMID: 15987817) Lorkovic ZJ … Barta A (RNA (New York, N.Y.) 2005) 1
  2. A revised model for U4atac/U6atac snRNA base pairing. (PMID: 11911359) Padgett RA … Shukla GC (RNA (New York, N.Y.) 2002) 1
  3. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. (PMID: 10199569) Shukla GC … Padgett RA (RNA (New York, N.Y.) 1999) 1

Products for RNU6ATAC13P Gene

Sources for RNU6ATAC13P Gene

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