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Aliases for RNU6ATAC Gene

Subcategory (RNA class) for RNU6ATAC Gene

snRNA

Quality Score for this RNA gene is

3

Aliases for RNU6ATAC Gene

  • RNA, U6atac Small Nuclear (U12-Dependent Splicing) 2 3 5
  • RNA, U6atac Small Nuclear 1 2 3
  • RNU6ATAC1 3
  • U6atac 3

External Ids for RNU6ATAC Gene

ORGUL Members for RNU6ATAC Gene

Previous GeneCards Identifiers for RNU6ATAC Gene

  • GC09U900909
  • GC09M136020
  • GC09M137029
  • GC09M106522

Summaries for RNU6ATAC Gene

GeneCards Summary for RNU6ATAC Gene

RNU6ATAC (RNA, U6atac Small Nuclear (U12-Dependent Splicing)) is an RNA Gene, and is affiliated with the snRNA class. Diseases associated with RNU6ATAC include Ablepharon-Macrostomia Syndrome and Isolated Growth Hormone Deficiency, Type Ia.

Additional gene information for RNU6ATAC Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6ATAC Gene

Genomics for RNU6ATAC Gene

GeneHancer (GH) Regulatory Elements for RNU6ATAC Gene

Promoters and enhancers for RNU6ATAC Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I134162 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 +0.1 79 3.6 CLOCK ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC GC09M134165 RNU6ATAC GC09P134164 WDR5 BRD3 LOC100130548 REXO4 SURF6 ENSG00000273249 MED22
GH09I134442 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.2 -278.7 -278709 2.3 HDGF PKNOX1 ARID4B SIN3A ZNF2 ZNF48 GLIS2 ZNF213 ELK1 ARID2 RNU6ATAC RXRA LOC100130548 COL5A1 COL5A1-AS1 LOC105376311 MIR4669
GH09I134440 Enhancer 0.6 dbSUPER 12.2 -276.5 -276540 0.9 PAF1 KLF1 ZSCAN4 KLF17 PAX8 MNT ZNF2 ZFHX2 JUND SSRP1 RNU6ATAC RXRA COL5A1 COL5A1-AS1 LOC105376311 MIR4669
GH09I134134 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 +28.5 28476 4 CLOCK ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF213 ZNF207 WDR5 ENSG00000273249 STKLD1 SARDH RNU6ATAC GC09M134165
GH09I134138 Enhancer 0.5 ENCODE 0.3 +25.4 25388 1.6 SCRT1 SCRT2 CEBPB HNF4A ZIC2 WDR5 ENSG00000273249 RNU6ATAC GC09M134165
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6ATAC on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RNU6ATAC gene promoter:

Genomic Locations for RNU6ATAC Gene

Genomic Locations for RNU6ATAC Gene
chr9:134,164,439-134,164,564
(GRCh38/hg38)
Size:
126 bases
Orientation:
Minus strand
chr9:137,029,561-137,029,686
(GRCh37/hg19)

Genomic View for RNU6ATAC Gene

Genes around RNU6ATAC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6ATAC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6ATAC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6ATAC Gene

Proteins for RNU6ATAC Gene

Post-translational modifications for RNU6ATAC Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6ATAC Gene

Domains & Families for RNU6ATAC Gene

Gene Families for RNU6ATAC Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNU6ATAC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6ATAC Gene

Function for RNU6ATAC Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6ATAC Gene

Localization for RNU6ATAC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6ATAC Gene

Pathways & Interactions for RNU6ATAC Gene

SuperPathways for RNU6ATAC Gene

No Data Available

Interacting Proteins for RNU6ATAC Gene

Gene Ontology (GO) - Biological Process for RNU6ATAC Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6ATAC Gene

Drugs & Compounds for RNU6ATAC Gene

No Compound Related Data Available

Transcripts for RNU6ATAC Gene

mRNA/cDNA for RNU6ATAC Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6ATAC Gene

No ASD Table

Relevant External Links for RNU6ATAC Gene

GeneLoc Exon Structure for
RNU6ATAC
ECgene alternative splicing isoforms for
RNU6ATAC

Expression for RNU6ATAC Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6ATAC Gene

NURSA nuclear receptor signaling pathways regulating expression of RNU6ATAC Gene:

RNU6ATAC

SOURCE GeneReport for Unigene cluster for RNU6ATAC Gene:

Hs.545589
genes like me logo Genes that share expression patterns with RNU6ATAC: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6ATAC Gene

Orthologs for RNU6ATAC Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6ATAC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6atac 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25541 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6atac 34
  • 94 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6atac 34
  • 84 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6atac 34
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6atac 34
  • 71 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6atac 34
  • 72 (a)
OneToMany
Species where no ortholog for RNU6ATAC was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6ATAC Gene

ENSEMBL:
Gene Tree for RNU6ATAC (if available)
TreeFam:
Gene Tree for RNU6ATAC (if available)

Paralogs for RNU6ATAC Gene

No data available for Paralogs for RNU6ATAC Gene

Variants for RNU6ATAC Gene

Sequence variations from dbSNP and Humsavar for RNU6ATAC Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1002897232 -- 134,164,467(-) A/G non_coding_transcript_variant
rs1003268400 -- 134,165,100(-) G/A upstream_transcript_variant
rs1006219830 -- 134,164,519(-) A/C/G non_coding_transcript_variant
rs1007089490 -- 134,164,269(-) G/A downstream_transcript_variant
rs1007447632 -- 134,164,877(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RNU6ATAC Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV deletion 23290073
nsv1125319 OTHER inversion 24896259
nsv825148 CNV gain 20364138

Additional Variant Information for RNU6ATAC Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6ATAC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNU6ATAC Gene

Disorders for RNU6ATAC Gene

MalaCards: The human disease database

(2) MalaCards diseases for RNU6ATAC Gene - From: DISEASES

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for RNU6ATAC

genes like me logo Genes that share disorders with RNU6ATAC: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RNU6ATAC Gene

Publications for RNU6ATAC Gene

  1. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris JM … Hakonarson H (The New England journal of medicine 2008) 44 58
  2. U4 small nuclear RNA can function in both the major and minor spliceosomes. (PMID: 14691257) Shukla GC … Padgett RA (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 58
  3. Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. (PMID: 12374753) Nottrott S … Lührmann R (The EMBO journal 2002) 3 58
  4. Human U4/U6.U5 and U4atac/U6atac.U5 tri-snRNPs exhibit similar protein compositions. (PMID: 11971955) Schneider C … Lührmann R (Molecular and cellular biology 2002) 3 58
  5. Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. (PMID: 8791582) Tarn WY … Steitz JA (Science (New York, N.Y.) 1996) 3 58

Products for RNU6ATAC Gene

Sources for RNU6ATAC Gene

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