Aliases for RNU6-970P Gene

Aliases for RNU6-970P Gene

  • RNA, U6 Small Nuclear 970, Pseudogene 2 3 5
  • RNU6-970P 5

External Ids for RNU6-970P Gene

Previous GeneCards Identifiers for RNU6-970P Gene

  • GC01M093438
  • GC00U934619

Summaries for RNU6-970P Gene

GeneCards Summary for RNU6-970P Gene

RNU6-970P (RNA, U6 Small Nuclear 970, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-970P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-970P Gene

Genomics for RNU6-970P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-970P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J092968 Enhancer 0.9 Ensembl ENCODE 250.7 +0.5 509 2.8 ZNF654 IKZF1 CEBPB REST TRIM22 HES1 CTCF SMAD4 RAD21 CUX1 HSALNG0005224 RF00026-056 RNU6-970P DIPK1A lnc-FAM69A-3 MTF2
GH01J092858 Enhancer 1 FANTOM5 ENCODE 11.1 +110.6 110614 0.3 BCLAF1 ZNF207 ZNF654 ZNF580 CEBPA CTCF CEBPB REST ZNF592 TRIM22 EVI5 SNORD21 RPL5 RNU6-970P lnc-RPL5-1 piR-39279-005 DIPK1A
GH01J092852 Enhancer 1 Ensembl ENCODE 11.1 +116.4 116380 3.5 NCOR1 NFIC HES1 BHLHE40 MNT ARNT FOXA2 NBN RUNX1 TAL1 lnc-RPL5-1 DIPK1A EVI5 RPL5 RNU6-970P piR-39279-005
GH01J093032 Enhancer 1 Ensembl ENCODE 10.6 -64.1 -64111 2 MYC NCOR1 IKZF1 BHLHE40 MNT ARNT IRF2 IRF4 TAL1 ZNF316 DIPK1A RNU6-210P MTF2 RNU6-970P RPL5 ENSG00000207022 ENSG00000251837 lnc-TMED5-6
GH01J092943 Enhancer 0.8 Ensembl dbSUPER 11.6 +25.4 25409 5.4 CEBPA NFIC YY1 FOXA2 PRDM6 PKNOX1 SCRT1 ZBTB33 FOXA1 RFX1 EVI5 RNU6-970P SNORA66 SNORD21 RPL5 DIPK1A ENSG00000207022 LOC100127934
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-970P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-970P Gene

Latest Assembly
chr1:92,969,604-92,969,710
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Previous Assembly
chr1:93,435,161-93,435,267
(GRCh37/hg19 by Entrez Gene)
Size:
107 bases
Orientation:
Minus strand

chr1:93,435,161-93,435,267
(GRCh37/hg19 by Ensembl)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-970P Gene

Genes around RNU6-970P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-970P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-970P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-970P Gene

Proteins for RNU6-970P Gene

Post-translational modifications for RNU6-970P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-970P Gene

Domains & Families for RNU6-970P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-970P Gene

Function for RNU6-970P Gene

Phenotypes From GWAS Catalog for RNU6-970P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-970P Gene

Localization for RNU6-970P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-970P Gene

Pathways & Interactions for RNU6-970P Gene

PathCards logo

SuperPathways for RNU6-970P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-970P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-970P Gene

Drugs & Compounds for RNU6-970P Gene

No Compound Related Data Available

Transcripts for RNU6-970P Gene

mRNA/cDNA for RNU6-970P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-970P Gene

No ASD Table

Relevant External Links for RNU6-970P Gene

GeneLoc Exon Structure for
RNU6-970P

Expression for RNU6-970P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-970P Gene

genes like me logo Genes that share expression patterns with RNU6-970P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-970P Gene

Orthologs for RNU6-970P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-970P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 30
  • 97 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia U6 30
  • 83 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia U6 30
  • 78 (a)
ManyToMany
Species where no ortholog for RNU6-970P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-970P Gene

ENSEMBL:
Gene Tree for RNU6-970P (if available)
TreeFam:
Gene Tree for RNU6-970P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU6-970P

Paralogs for RNU6-970P Gene

No data available for Paralogs for RNU6-970P Gene

Variants for RNU6-970P Gene

Additional Variant Information for RNU6-970P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-970P
Leiden Open Variation Database (LOVD)
RNU6-970P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-970P Gene

Disorders for RNU6-970P Gene

No disorders were found for RNU6-970P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-970P Gene

Publications for RNU6-970P Gene

No publications were found for RNU6-970P Gene.

No data available for Mastermind for RNU6-970P Gene

Products for RNU6-970P Gene

Sources for RNU6-970P Gene