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Aliases for RNU6-933P Gene

Subcategory (RNA class) for RNU6-933P Gene


Aliases for RNU6-933P Gene

  • RNA, U6 Small Nuclear 933, Pseudogene 2 3 5

External Ids for RNU6-933P Gene

ORGUL Members for RNU6-933P Gene

Previous GeneCards Identifiers for RNU6-933P Gene

  • GC11M060754
  • GC00U934952

Summaries for RNU6-933P Gene

GeneCards Summary for RNU6-933P Gene

RNU6-933P (RNA, U6 Small Nuclear 933, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-933P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

Additional gene information for RNU6-933P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-933P Gene

Genomics for RNU6-933P Gene

GeneHancer (GH) Regulatory Elements for RNU6-933P Gene

Promoters and enhancers for RNU6-933P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I060985 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -1.6 -1605 2.9 RFX1 HES1 FOXA1 RNU6-933P CD6 CD5 FTH1 SDHAF2 TRA-TGC10-1
GH11I060950 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE 11.6 +32.7 32671 4.9 HDGF PKNOX1 SMAD1 RB1 YBX1 BATF IRF4 YY1 ZNF207 ZNF143 SLC15A3 VPS37C RNU6-933P CPSF7 MS4A18 PTGDR2 PRPF19 MS4A2 CYB561A3 SDHAF2
GH11I061101 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 -118.4 -118383 3.7 HDGF BCOR ZSCAN4 ZMYM3 EBF1 CDC5L FOXK2 SCRT2 HES1 SRF CD5 GC11P061102 GC11P061103 CD6 RNU6-933P VPS37C SDHAF2 GC11P061126 GC11M061097
GH11I060923 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 10.5 +60.3 60308 2.1 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF121 ZNF143 FOS KLF13 ENSG00000256196 TMEM132A CPSF7 TMEM138 RN7SL23P TMEM109 RNU6-933P PTGDR2 GC11P060921
GH11I061128 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.3 -145.8 -145834 4.2 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B NEUROD1 SIN3A DMAP1 CD5 CD6 RNU6-933P GC11P061126 ENSG00000279549 GC11M061097 VPS37C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-933P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-933P Gene

Genomic Locations for RNU6-933P Gene
107 bases
Minus strand

Genomic View for RNU6-933P Gene

Genes around RNU6-933P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-933P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-933P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-933P Gene

ORGUL Member Location for RNU6-933P Gene

ORGUL Member Location for RNU6-933P gene

Proteins for RNU6-933P Gene

Post-translational modifications for RNU6-933P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-933P Gene

Domains & Families for RNU6-933P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-933P Gene

Function for RNU6-933P Gene

Phenotypes From GWAS Catalog for RNU6-933P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-933P Gene

Localization for RNU6-933P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-933P Gene

Pathways & Interactions for RNU6-933P Gene

SuperPathways for RNU6-933P Gene

No Data Available

Interacting Proteins for RNU6-933P Gene

Gene Ontology (GO) - Biological Process for RNU6-933P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU6-933P Gene

Drugs & Compounds for RNU6-933P Gene

No Compound Related Data Available

Transcripts for RNU6-933P Gene

mRNA/cDNA for RNU6-933P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-933P Gene

No ASD Table

Relevant External Links for RNU6-933P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU6-933P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-933P Gene

genes like me logo Genes that share expression patterns with RNU6-933P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-933P Gene

Orthologs for RNU6-933P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-933P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U6 34
  • 97 (a)
(Canis familiaris)
Mammalia U6 34
  • 76 (a)
(Monodelphis domestica)
Mammalia U6 34
  • 73 (a)
(Mus musculus)
Mammalia Gm25362 34
  • 63 (a)
Species where no ortholog for RNU6-933P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-933P Gene

Gene Tree for RNU6-933P (if available)
Gene Tree for RNU6-933P (if available)

Paralogs for RNU6-933P Gene

No data available for Paralogs for RNU6-933P Gene

Variants for RNU6-933P Gene

Additional Variant Information for RNU6-933P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-933P Gene

Disorders for RNU6-933P Gene

No disorders were found for RNU6-933P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-933P Gene

Publications for RNU6-933P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-933P Gene

Sources for RNU6-933P Gene

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