Aliases for RNU6-884P Gene

Aliases for RNU6-884P Gene

  • RNA, U6 Small Nuclear 884, Pseudogene 2 3 5

External Ids for RNU6-884P Gene

Previous GeneCards Identifiers for RNU6-884P Gene

  • GC01M150998
  • GC00U935297

Summaries for RNU6-884P Gene

GeneCards Summary for RNU6-884P Gene

RNU6-884P (RNA, U6 Small Nuclear 884, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-884P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-884P Gene

Genomics for RNU6-884P Gene

GeneHancer (GH) Regulatory Elements for RNU6-884P Gene

Promoters and enhancers for RNU6-884P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J151024 Promoter 0.9 Ensembl 750.6 -1.6 -1649 0.2 CTCF CC2D1A RAD21 MNT TRIM22 ZNF143 RFX1 MTA2 CTBP1 EHMT2 RNU6-884P RF00017-342 RF00026-070 POGZ VPS45 PRUNE1
GH01J151022 Enhancer 0.7 Ensembl ENCODE 750.6 -0.1 -149 2 MTA3 SP7 ZSCAN21 PRDM1 WT1 ZBTB33 RNU6-884P RF00017-341 RF00026-070 PSMD4 SEMA6C PSMB4 RF00017-342 PRUNE1
GH01J151193 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.4 -174.8 -174835 7.8 ZNF785 SIN3A SP1 CTCF SREBF1 ZBTB6 POLR2A TCF7L2 USF2 ATF1 PIP5K1A NONHSAG002903.2 RF00017-344 SETDB1 ZNF687 PRPF3 PI4KB ARNT UBE2D3P3 GABPB2
GH01J151142 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -122.4 -122357 6.1 SP1 FOXA1 MIXL1 NFYC L3MBTL2 MNT POLR2A ZFX SP5 ZNF704 SEMA6C BNIPL LYSMD1 GABPB2 PRUNE1 TMOD4 VPS72 PIP5K1A RNU6-884P C1orf56
GH01J150760 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.4 +259.2 259203 5.7 SMARCE1 POLR2A HDAC2 ETV6 ELF1 RELA HLF L3MBTL2 MAX BCL6B CTSS HORMAD1 ARNT RPS27AP6 UBE2D3P3 CTSK RNU6-1309P RNU6-1042P GOLPH3L MCL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-884P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-884P Gene

Genomic Locations for RNU6-884P Gene
chr1:151,022,746-151,022,852
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-884P Gene

Genes around RNU6-884P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-884P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-884P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-884P Gene

Proteins for RNU6-884P Gene

Post-translational modifications for RNU6-884P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-884P Gene

Domains & Families for RNU6-884P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-884P Gene

Function for RNU6-884P Gene

Phenotypes From GWAS Catalog for RNU6-884P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-884P Gene

Localization for RNU6-884P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-884P Gene

Pathways & Interactions for RNU6-884P Gene

PathCards logo

SuperPathways for RNU6-884P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-884P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-884P Gene

Drugs & Compounds for RNU6-884P Gene

No Compound Related Data Available

Transcripts for RNU6-884P Gene

mRNA/cDNA for RNU6-884P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-884P Gene

No ASD Table

Relevant External Links for RNU6-884P Gene

GeneLoc Exon Structure for
RNU6-884P
ECgene alternative splicing isoforms for
RNU6-884P

Expression for RNU6-884P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-884P Gene

genes like me logo Genes that share expression patterns with RNU6-884P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-884P Gene

Orthologs for RNU6-884P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-884P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 33
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 33
  • 74 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 33
  • 74 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 33
  • 50 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U6 33
  • 76 (a)
ManyToMany
Species where no ortholog for RNU6-884P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-884P Gene

ENSEMBL:
Gene Tree for RNU6-884P (if available)
TreeFam:
Gene Tree for RNU6-884P (if available)

Paralogs for RNU6-884P Gene

No data available for Paralogs for RNU6-884P Gene

Variants for RNU6-884P Gene

Additional Variant Information for RNU6-884P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-884P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-884P Gene

Disorders for RNU6-884P Gene

No disorders were found for RNU6-884P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-884P Gene

Publications for RNU6-884P Gene

No publications were found for RNU6-884P Gene.

No data available for External Links for RNU6-884P Gene

Products for RNU6-884P Gene

Sources for RNU6-884P Gene