Aliases for RNU6-880P Gene

Aliases for RNU6-880P Gene

  • RNA, U6 Small Nuclear 880, Pseudogene 2 3 5

External Ids for RNU6-880P Gene

Previous GeneCards Identifiers for RNU6-880P Gene

  • GC01P043460
  • GC00U935704

Summaries for RNU6-880P Gene

GeneCards Summary for RNU6-880P Gene

RNU6-880P (RNA, U6 Small Nuclear 880, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-880P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-880P Gene

Genomics for RNU6-880P Gene

GeneHancer (GH) Regulatory Elements for RNU6-880P Gene

Promoters and enhancers for RNU6-880P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J042990 Enhancer 1 Ensembl ENCODE 750.6 +1.0 1045 4.3 ZNF217 MIXL1 ELF3 NCOA3 TFE3 PRDM1 SP5 GATAD2A RXRB CTBP1 RNU6-880P RF00026-032 SLC2A1-AS1 FAM183A C1orf210 RF00017-180
GH01J042988 Enhancer 0.2 ENCODE 750.6 -2.0 -1997 1.2 HE856240 RNU6-880P RF00026-032 FAM183A MG828437 SLC2A1-AS1
GH01J042949 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.1 -34.6 -34555 15.5 ZNF24 ZBTB40 ZBTB6 RBPJ SMARCE1 POLR2A CREB1 RUNX1 MYC CC2D1A SLC2A1 SZT2 SLC2A1-AS1 FOXJ3 PPIH P3H1 CDC20 MED8 ARTN CCDC30
GH01J042929 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -52.1 -52075 19 SIN3A ZNF24 CTCF SMARCE1 POLR2A MCM5 USF2 NR2F6 RUNX1 CC2D1A SLC2A1-AS1 HYI SZT2 ARTN RNU6-880P TIE1 FOXJ3 C1orf210 ERMAP CCDC30
GH01J042923 Promoter/Enhancer 1.7 ENCODE CraniofacialAtlas dbSUPER 11.5 -66.6 -66617 3.8 ZNF785 SIN3A ZNF24 SP1 CTCF RBPJ SMARCE1 POLR2A FOS CREB1 lnc-ZNF691-5 FOXJ3 SZT2 PPIH HYI KDM4A ENSG00000237090 HNRNPFP1 P3H1 RNU6-880P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-880P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-880P Gene

Genomic Locations for RNU6-880P Gene
chr1:42,991,438-42,991,544
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-880P Gene

Genes around RNU6-880P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-880P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-880P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-880P Gene

Proteins for RNU6-880P Gene

Post-translational modifications for RNU6-880P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-880P Gene

Domains & Families for RNU6-880P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-880P Gene

Function for RNU6-880P Gene

Phenotypes From GWAS Catalog for RNU6-880P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-880P Gene

Localization for RNU6-880P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-880P Gene

Pathways & Interactions for RNU6-880P Gene

PathCards logo

SuperPathways for RNU6-880P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-880P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-880P Gene

Drugs & Compounds for RNU6-880P Gene

No Compound Related Data Available

Transcripts for RNU6-880P Gene

mRNA/cDNA for RNU6-880P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-880P Gene

No ASD Table

Relevant External Links for RNU6-880P Gene

GeneLoc Exon Structure for
RNU6-880P
ECgene alternative splicing isoforms for
RNU6-880P

Expression for RNU6-880P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-880P Gene

genes like me logo Genes that share expression patterns with RNU6-880P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-880P Gene

Orthologs for RNU6-880P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-880P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 33
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 33
  • 88 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 33
  • 85 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 33
  • 81 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24393 33
  • 75 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 33
  • 75 (a)
ManyToMany
Species where no ortholog for RNU6-880P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-880P Gene

ENSEMBL:
Gene Tree for RNU6-880P (if available)
TreeFam:
Gene Tree for RNU6-880P (if available)

Paralogs for RNU6-880P Gene

No data available for Paralogs for RNU6-880P Gene

Variants for RNU6-880P Gene

Additional Variant Information for RNU6-880P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-880P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-880P Gene

Disorders for RNU6-880P Gene

No disorders were found for RNU6-880P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-880P Gene

Publications for RNU6-880P Gene

No publications were found for RNU6-880P Gene.

No data available for External Links for RNU6-880P Gene

Products for RNU6-880P Gene

Sources for RNU6-880P Gene