Aliases for RNU6-877P Gene

Aliases for RNU6-877P Gene

  • RNA, U6 Small Nuclear 877, Pseudogene 2 3 5

External Ids for RNU6-877P Gene

Previous GeneCards Identifiers for RNU6-877P Gene

  • GC01P051849
  • GC00U934922

Summaries for RNU6-877P Gene

GeneCards Summary for RNU6-877P Gene

RNU6-877P (RNA, U6 Small Nuclear 877, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-877P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-877P Gene

Genomics for RNU6-877P Gene

GeneHancer (GH) Regulatory Elements for RNU6-877P Gene

Promoters and enhancers for RNU6-877P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J051328 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -51.9 -51854 3.4 ZNF217 NRF1 POLR2G JUND FOS ZFX ZNF639 ZIC2 ZBTB10 CLOCK TTC39A-AS1 TTC39A RNU6-877P LINC01562
GH01J051296 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 -85.0 -84979 1.8 CTCF ZIC2 CLOCK ZBTB11 REST KLF4 KLF7 ZBTB25 MYC RCOR1 TTC39A ENSG00000236434 RNU6-877P piR-61945-018 HSALNG0003565
GH01J051728 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 9.1 +348.0 348003 4.2 HNRNPK ZBTB40 ZNF217 NRF1 POLR2G USF1 SP1 NCOR1 PHF8 ZIC2 OSBPL9 HSALNG0003587 ENSG00000266993 RNF11 PRPF38A NRDC TUT4 RNU6-877P piR-31937-003
GH01J051422 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 11.5 +39.5 39502 4.4 MYC RFX1 HES1 CUX1 TOE1 CTBP1 ATF2 TAF9B NFYB RBM25 PRPF38A ENSG00000238140 EPS15 RNU6-877P ENSG00000227070 TTC39A lnc-TTC39A-3 RF00017-206
GH01J051303 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -78.2 -78164 0.8 RELA RBM25 IRF1 SPI1 BCOR FOS EBF1 IKZF1 NFE2 GATA2 TTC39A ENSG00000236434 RNU6-877P EPS15 piR-61945-018 HSALNG0003565
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-877P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-877P Gene

Genomic Locations for RNU6-877P Gene
chr1:51,382,308-51,382,414
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-877P Gene

Genes around RNU6-877P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-877P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-877P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-877P Gene

Proteins for RNU6-877P Gene

Post-translational modifications for RNU6-877P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-877P Gene

Domains & Families for RNU6-877P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-877P Gene

Function for RNU6-877P Gene

Phenotypes From GWAS Catalog for RNU6-877P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-877P Gene

Localization for RNU6-877P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-877P Gene

Pathways & Interactions for RNU6-877P Gene

PathCards logo

SuperPathways for RNU6-877P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-877P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-877P Gene

Drugs & Compounds for RNU6-877P Gene

No Compound Related Data Available

Transcripts for RNU6-877P Gene

mRNA/cDNA for RNU6-877P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-877P Gene

No ASD Table

Relevant External Links for RNU6-877P Gene

GeneLoc Exon Structure for
RNU6-877P

Expression for RNU6-877P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-877P Gene

genes like me logo Genes that share expression patterns with RNU6-877P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-877P Gene

Orthologs for RNU6-877P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-877P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23421 31
  • 81 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 31
  • 75 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 31
  • 71 (a)
ManyToMany
Species where no ortholog for RNU6-877P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-877P Gene

ENSEMBL:
Gene Tree for RNU6-877P (if available)
TreeFam:
Gene Tree for RNU6-877P (if available)

Paralogs for RNU6-877P Gene

No data available for Paralogs for RNU6-877P Gene

Variants for RNU6-877P Gene

Additional Variant Information for RNU6-877P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-877P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-877P Gene

Disorders for RNU6-877P Gene

No disorders were found for RNU6-877P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-877P Gene

Publications for RNU6-877P Gene

No publications were found for RNU6-877P Gene.

No data available for Mastermind for RNU6-877P Gene

Products for RNU6-877P Gene

Sources for RNU6-877P Gene