RNU6-871P Gene (Pseudogene)

RNA, U6 Small Nuclear 871, Pseudogene

GC12M059450
GIFtS:
5
See more...

Aliases for RNU6-871P Gene

Aliases for RNU6-871P Gene

  • RNA, U6 Small Nuclear 871, Pseudogene 2 3 5
  • RNU6-871P 5

External Ids for RNU6-871P Gene

Previous GeneCards Identifiers for RNU6-871P Gene

  • GC12M059845
  • GC00U936056

Summaries for RNU6-871P Gene

GeneCards Summary for RNU6-871P Gene

RNU6-871P (RNA, U6 Small Nuclear 871, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-871P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-871P Gene

Genomics for RNU6-871P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU6-871P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J059452 Enhancer 0.7 Ensembl ENCODE 600.7 -1.9 -1929 2.2 CEBPB FOS NR2F2 CEBPG BHLHE40 JUND SMARCA4 RF00026-250 RNU6-871P piR-37026-127 SLC16A7 LRIG3
GH12J059499 Enhancer 0.4 Ensembl 11.7 -49.9 -49929 2.2 SCRT2 USF1 JUNB BATF RNU6-871P RNU4-20P SLC16A7 LINC02448 piR-37026-127 LRIG3
GH12J059483 Enhancer 0.3 Ensembl 12.1 -33.7 -33729 1.4 RUNX3 SPI1 RNU6-871P RNU4-20P piR-37026-127 LINC02448 SLC16A7 LRIG3
GH12J059548 Enhancer 0.3 Ensembl 12.3 -98.2 -98229 0.8 FOXA1 piR-55036-023 RNU6-871P RNU4-20P LINC02448 SLC16A7 LRIG3
GH12J059491 Enhancer 0.3 Ensembl 12 -41.2 -41229 1.2 SPI1 RNU6-871P RNU4-20P SLC16A7 piR-37026-127 LINC02448 LRIG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-871P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-871P Gene

Genomic Locations for RNU6-871P Gene
chr12:59,450,673-59,450,772
(GRCh38/hg38)
Size:
100 bases
Orientation:
Minus strand

Genomic View for RNU6-871P Gene

Genes around RNU6-871P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-871P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-871P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-871P Gene

Proteins for RNU6-871P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-871P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-871P Gene

Domains & Families for RNU6-871P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-871P Gene

Function for RNU6-871P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU6-871P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-871P Gene

Localization for RNU6-871P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-871P Gene

Pathways & Interactions for RNU6-871P Gene

PathCards logo

SuperPathways for RNU6-871P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-871P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-871P Gene

Drugs & Compounds for RNU6-871P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-871P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU6-871P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-871P Gene

No ASD Table

Relevant External Links for RNU6-871P Gene

GeneLoc Exon Structure for
RNU6-871P

Expression for RNU6-871P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-871P Gene

mRNA expression in normal human tissues for RNU6-871P Gene
mRNA expression by GTEx for RNU6-871P Gene
genes like me logo Genes that share expression patterns with RNU6-871P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-871P Gene

Orthologs for RNU6-871P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-871P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U6 31
  • 99 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia U6 31
  • 63 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Gm23055 31
  • 61 (a)
 ManyToMany
Cow
(Bos Taurus)
 Mammalia U6 31
  • 58 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia U6 31
  • 52 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia U6 31
  • 55 (a)
 ManyToMany
Species where no ortholog for RNU6-871P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-871P Gene

ENSEMBL:
Gene Tree for RNU6-871P (if available)
TreeFam:
Gene Tree for RNU6-871P (if available)

Paralogs for RNU6-871P Gene

No data available for Paralogs for RNU6-871P Gene

Variants for RNU6-871P Gene

Additional Variant Information for RNU6-871P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-871P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-871P Gene

Disorders for RNU6-871P Gene

No disorders were found for RNU6-871P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-871P Gene

Publications for RNU6-871P Gene

No publications were found for RNU6-871P Gene.

No data available for Mastermind for RNU6-871P Gene

Products for RNU6-871P Gene

Sources for RNU6-871P Gene