Aliases for RNU6-841P Gene

Aliases for RNU6-841P Gene

  • RNA, U6 Small Nuclear 841, Pseudogene 2 3 5
  • RNU6-841P 5

External Ids for RNU6-841P Gene

Previous GeneCards Identifiers for RNU6-841P Gene

  • GC19M050270
  • GC00U934428

Summaries for RNU6-841P Gene

GeneCards Summary for RNU6-841P Gene

RNU6-841P (RNA, U6 Small Nuclear 841, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-841P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-841P Gene

Genomics for RNU6-841P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-841P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J049763 Promoter/Enhancer 0.6 EPDnew Ensembl 600.7 +1.0 1030 0.4 PRDM10 RF00026-511 RNU6-841P TSKS AP2A1
GH19J049816 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 -54.1 -54115 5 ZNF221 SP1 CREB1 TEAD4 PRDM10 RFX1 SIX5 IKZF1 RFX5 ZNF692 MED25 FUZ lnc-FUZ-1 PRR12 NUP62 POLD1 PTOV1-AS2 PNKP PTOV1 SNRNP70
GH19J049741 Enhancer 0.5 Ensembl 12.2 +22.9 22929 1.4 CEBPA CEBPB FOXA2 FOSL1 CEBPG MYC HLF ELF1 ADM5 CPT1C PRMT1 TSKS RNU6-841P AP2A1 RRAS SCAF1 SLC17A7 HSALNG0127025
GH19J049738 Enhancer 0.3 Ensembl 12.2 +25.9 25929 1 IKZF1 SPI1 CPT1C ADM5 PRMT1 TSKS AP2A1 RNU6-841P SLC17A7 HSALNG0127025 piR-40605-004
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-841P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-841P Gene

Genomic Locations for RNU6-841P Gene
chr19:49,764,524-49,764,630
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-841P Gene

Genes around RNU6-841P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-841P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-841P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-841P Gene

Proteins for RNU6-841P Gene

Post-translational modifications for RNU6-841P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-841P Gene

Domains & Families for RNU6-841P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-841P Gene

Function for RNU6-841P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-841P Gene

Localization for RNU6-841P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-841P Gene

Pathways & Interactions for RNU6-841P Gene

PathCards logo

SuperPathways for RNU6-841P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-841P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-841P Gene

Drugs & Compounds for RNU6-841P Gene

No Compound Related Data Available

Transcripts for RNU6-841P Gene

mRNA/cDNA for RNU6-841P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-841P Gene

No ASD Table

Relevant External Links for RNU6-841P Gene

GeneLoc Exon Structure for
RNU6-841P

Expression for RNU6-841P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-841P Gene

genes like me logo Genes that share expression patterns with RNU6-841P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-841P Gene

Orthologs for RNU6-841P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-841P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 99 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm25681 31
  • 85 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 75 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U6 31
  • 85 (a)
OneToOne
Species where no ortholog for RNU6-841P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-841P Gene

ENSEMBL:
Gene Tree for RNU6-841P (if available)
TreeFam:
Gene Tree for RNU6-841P (if available)

Paralogs for RNU6-841P Gene

No data available for Paralogs for RNU6-841P Gene

Variants for RNU6-841P Gene

Additional Variant Information for RNU6-841P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-841P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-841P Gene

Disorders for RNU6-841P Gene

No disorders were found for RNU6-841P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-841P Gene

Publications for RNU6-841P Gene

No publications were found for RNU6-841P Gene.

No data available for Mastermind for RNU6-841P Gene

Products for RNU6-841P Gene

Sources for RNU6-841P Gene