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Aliases for RNU6-83P Gene

Subcategory (RNA class) for RNU6-83P Gene

snRNA

Aliases for RNU6-83P Gene

  • RNA, U6 Small Nuclear 83, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 83 2
  • RNU6-83 3

External Ids for RNU6-83P Gene

ORGUL Members for RNU6-83P Gene

Previous HGNC Symbols for RNU6-83P Gene

  • RNU6-83

Previous GeneCards Identifiers for RNU6-83P Gene

  • GC13P099680

Summaries for RNU6-83P Gene

GeneCards Summary for RNU6-83P Gene

RNU6-83P (RNA, U6 Small Nuclear 83, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-83P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-83P Gene

Genomics for RNU6-83P Gene

GeneHancer (GH) Regulatory Elements for RNU6-83P Gene

Promoters and enhancers for RNU6-83P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I099022 Enhancer 0.6 dbSUPER 550.8 -0.4 -396 4.6 JUN MAFG EP300 FOSL1 ZNF316 JUND STAT3 EMSY MAFK GC13P099026 RNU6-83P DOCK9-AS2 DOCK9 GC13P098992
GH13I098971 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.4 -49.7 -49681 8 TCF12 ZNF766 GATA2 ATF7 NCOA1 ATF4 SMARCA4 MYNN KDM1A MEIS2 DOCK9 DOCK9-AS2 RNU6-83P DOCK9-AS1 GC13M098967 RPL7L1P12
GH13I099044 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +21.0 20969 2.7 SMARCE1 CEBPB MAX DPF2 CEBPG ZNF217 CTBP1 GATA3 POLR2A ZNF600 DOCK9-AS2 DOCK9 RNU6-83P DOCK9-AS1 GC13M099085
GH13I098996 Enhancer 1.1 Ensembl ENCODE dbSUPER 13.1 -27.0 -26973 2.8 SMARCE1 HDAC1 MEIS2 PKNOX1 ETV1 BHLHE40 JUN BATF FOSL1 ZNF692 DOCK9-AS2 DOCK9 RNU6-83P DOCK9-AS1 GC13P098992 GC13P098991 GC13P099026
GH13I098992 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 12 -32.1 -32134 1.3 CTCF CEBPB EBF1 CEBPG ATF2 ZNF316 ATF4 ATF7 ZBTB33 IKZF2 GC13P098991 GC13P098992 DOCK9-AS2 DOCK9 RNU6-83P DOCK9-AS1 GC13P099026
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-83P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-83P Gene

Genomic Locations for RNU6-83P Gene
chr13:99,025,234-99,025,345
(GRCh38/hg38)
Size:
112 bases
Orientation:
Plus strand
chr13:99,677,488-99,677,599
(GRCh37/hg19)

Genomic View for RNU6-83P Gene

Genes around RNU6-83P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-83P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-83P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-83P Gene

Proteins for RNU6-83P Gene

Post-translational modifications for RNU6-83P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-83P Gene

Domains & Families for RNU6-83P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-83P Gene

Function for RNU6-83P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-83P Gene

Localization for RNU6-83P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-83P Gene

Pathways & Interactions for RNU6-83P Gene

SuperPathways for RNU6-83P Gene

No Data Available

Interacting Proteins for RNU6-83P Gene

Gene Ontology (GO) - Biological Process for RNU6-83P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-83P Gene

Drugs & Compounds for RNU6-83P Gene

No Compound Related Data Available

Transcripts for RNU6-83P Gene

mRNA/cDNA for RNU6-83P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-83P Gene

No ASD Table

Relevant External Links for RNU6-83P Gene

GeneLoc Exon Structure for
RNU6-83P
ECgene alternative splicing isoforms for
RNU6-83P

Expression for RNU6-83P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-83P Gene

genes like me logo Genes that share expression patterns with RNU6-83P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-83P Gene

Orthologs for RNU6-83P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-83P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25207 34
  • 88 (a)
ManyToMany
Gm24164 34
  • 82 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 85 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6 34
  • 85 (a)
OneToMany
Species where no ortholog for RNU6-83P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-83P Gene

ENSEMBL:
Gene Tree for RNU6-83P (if available)
TreeFam:
Gene Tree for RNU6-83P (if available)

Paralogs for RNU6-83P Gene

No data available for Paralogs for RNU6-83P Gene

Variants for RNU6-83P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-83P Gene

Variant ID Type Subtype PubMed ID
esv2747870 CNV deletion 23290073
esv3892433 CNV gain 25118596
nsv1050094 CNV gain 25217958

Additional Variant Information for RNU6-83P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-83P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-83P Gene

Disorders for RNU6-83P Gene

Additional Disease Information for RNU6-83P

No disorders were found for RNU6-83P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-83P Gene

Publications for RNU6-83P Gene

No publications were found for RNU6-83P Gene.

Products for RNU6-83P Gene

Sources for RNU6-83P Gene

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