Aliases for RNU6-797P Gene

Aliases for RNU6-797P Gene

  • RNA, U6 Small Nuclear 797, Pseudogene 2 3 5

External Ids for RNU6-797P Gene

Previous GeneCards Identifiers for RNU6-797P Gene

  • GC07M139911
  • GC00U934509

Summaries for RNU6-797P Gene

GeneCards Summary for RNU6-797P Gene

RNU6-797P (RNA, U6 Small Nuclear 797, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-797P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-797P Gene

Genomics for RNU6-797P Gene

GeneHancer (GH) Regulatory Elements for RNU6-797P Gene

Promoters and enhancers for RNU6-797P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J140229 Promoter/Enhancer 1.8 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 12 -22.2 -22166 5.7 EP300 FOXK2 ZNF217 NRF1 POLR2G NCOR1 CTCF KDM6A ZBTB10 TCF7 lnc-RAB19-3 lnc-KDM7A-4 KDM7A LUC7L2 RNU6-797P SLC37A3 KDM7A-DT TBXAS1 RAB19 RF00017-6687
GH07J140252 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -42.5 -42514 9.2 EP300 FOXK2 TCF12 NCOR1 KDM6A TCF7 FOXA1 REST HES1 ZBTB25 KDM7A RNU6-797P TBXAS1 BRAF NONHSAG048952.2 RNU1-58P RF00003-084 lnc-RAB19-3
GH07J140238 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -31.7 -31656 6.1 ZNF263 ZBTB11 AFF1 TRIM28 REST RELA HES1 TOE1 MYC CTBP1 RF00003-084 RNU1-58P RNU6-797P KDM7A PARP12 RF00017-6687 lnc-RAB19-3
GH07J140321 Enhancer 1.1 Ensembl ENCODE 11.4 -113.3 -113330 3.2 PHB2 ZBTB11 AFF1 MYC CTBP1 JUN HDAC3 NCOR1 RELA TRIM25 RNU6-797P KDM7A HSALNG0061787 lnc-MKRN1-10 SLC37A3
GH07J140317 Enhancer 1.1 FANTOM5 ENCODE 11.4 -108.1 -108123 0.2 PHB2 HES1 MYC CTBP1 MIER1 NCOR1 NFIC ARNT TRIM24 IRF1 HSALNG0061787 KDM7A RNU6-797P TBXAS1 lnc-MKRN1-10 SLC37A3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-797P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-797P Gene

Genomic Locations for RNU6-797P Gene
chr7:140,209,563-140,209,671
(GRCh38/hg38)
Size:
109 bases
Orientation:
Minus strand

Genomic View for RNU6-797P Gene

Genes around RNU6-797P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-797P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-797P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-797P Gene

Proteins for RNU6-797P Gene

Post-translational modifications for RNU6-797P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-797P Gene

Domains & Families for RNU6-797P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-797P Gene

Function for RNU6-797P Gene

Phenotypes From GWAS Catalog for RNU6-797P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-797P Gene

Localization for RNU6-797P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-797P Gene

Pathways & Interactions for RNU6-797P Gene

PathCards logo

SuperPathways for RNU6-797P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-797P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-797P Gene

Drugs & Compounds for RNU6-797P Gene

No Compound Related Data Available

Transcripts for RNU6-797P Gene

mRNA/cDNA for RNU6-797P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-797P Gene

No ASD Table

Relevant External Links for RNU6-797P Gene

GeneLoc Exon Structure for
RNU6-797P

Expression for RNU6-797P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-797P Gene

genes like me logo Genes that share expression patterns with RNU6-797P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-797P Gene

Orthologs for RNU6-797P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-797P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 31
  • 84 (a)
ManyToMany
Species where no ortholog for RNU6-797P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-797P Gene

ENSEMBL:
Gene Tree for RNU6-797P (if available)
TreeFam:
Gene Tree for RNU6-797P (if available)

Paralogs for RNU6-797P Gene

No data available for Paralogs for RNU6-797P Gene

Variants for RNU6-797P Gene

Additional Variant Information for RNU6-797P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-797P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-797P Gene

Disorders for RNU6-797P Gene

No disorders were found for RNU6-797P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-797P Gene

Publications for RNU6-797P Gene

No publications were found for RNU6-797P Gene.

No data available for Mastermind for RNU6-797P Gene

Products for RNU6-797P Gene

Sources for RNU6-797P Gene