Aliases for RNU6-786P Gene

Aliases for RNU6-786P Gene

  • RNA, U6 Small Nuclear 786, Pseudogene 2 3 5

External Ids for RNU6-786P Gene

Previous GeneCards Identifiers for RNU6-786P Gene

  • GC06P158356
  • GC00U935498

Summaries for RNU6-786P Gene

GeneCards Summary for RNU6-786P Gene

RNU6-786P (RNA, U6 Small Nuclear 786, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-786P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-786P Gene

Genomics for RNU6-786P Gene

GeneHancer (GH) Regulatory Elements for RNU6-786P Gene

Promoters and enhancers for RNU6-786P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J158013 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.1 +83.8 83833 8.8 NCOR1 JUND FOS ZIC2 KDM6A TCF7 ZBTB25 TGIF2 SKI TEAD1 SYNJ2 RF00017-5906 RNU6-786P GTF2H5 RF00017-5907
GH06J158024 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 10.5 +92.3 92332 4.8 CTCF TCF12 POLR2G RBAK JUND FOS ZNF639 ZIC2 REST ZBTB10 SYNJ2 SNX9 LOC100420839 RNU6-786P DYNLT1 LDHAL6FP RF00017-5907 RF00017-5906
GH06J158007 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 11.3 +76.2 76197 5.1 EP300 FOXK2 POLR2G SP1 NCOR1 FOS ZIC2 REST KDM6A TCF7 SYNJ2 RNU6-786P GTF2H5 RSPH3 RF00017-5906 SYNJ2-IT1
GH06J157754 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 11.4 -177.2 -177194 4.9 CTCF ZSCAN5C PHB2 TEAD4 ZBTB5 ZBTB11 AFF1 TRIM28 TARDBP REST SNX9 ENSG00000234361 ENSG00000236324 RNU6-786P ENSG00000229502 SYNJ2 TATDN2P2 DYNLT1 lnc-SERAC1-15 piR-56037-042
GH06J157811 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -119.7 -119718 6.3 FOS ZBTB11 AFF1 REST DNMT1 HES1 NR3C1 TOE1 MYC CTBP1 SNX9 ENSG00000229502 RNU6-786P SYNJ2 lnc-SERAC1-11 piR-61945-445
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-786P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-786P Gene

Genomic Locations for RNU6-786P Gene
chr6:157,934,168-157,934,257
(GRCh38/hg38)
Size:
90 bases
Orientation:
Plus strand

Genomic View for RNU6-786P Gene

Genes around RNU6-786P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-786P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-786P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-786P Gene

Proteins for RNU6-786P Gene

Post-translational modifications for RNU6-786P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-786P Gene

Domains & Families for RNU6-786P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-786P Gene

Function for RNU6-786P Gene

Phenotypes From GWAS Catalog for RNU6-786P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-786P Gene

Localization for RNU6-786P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-786P Gene

Pathways & Interactions for RNU6-786P Gene

PathCards logo

SuperPathways for RNU6-786P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-786P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-786P Gene

Drugs & Compounds for RNU6-786P Gene

No Compound Related Data Available

Transcripts for RNU6-786P Gene

mRNA/cDNA for RNU6-786P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-786P Gene

No ASD Table

Relevant External Links for RNU6-786P Gene

GeneLoc Exon Structure for
RNU6-786P

Expression for RNU6-786P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-786P Gene

genes like me logo Genes that share expression patterns with RNU6-786P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-786P Gene

Orthologs for RNU6-786P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-786P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 64 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22458 31
  • 62 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 31
  • 59 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 31
  • 57 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6 31
  • 61 (a)
OneToMany
Species where no ortholog for RNU6-786P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-786P Gene

ENSEMBL:
Gene Tree for RNU6-786P (if available)
TreeFam:
Gene Tree for RNU6-786P (if available)

Paralogs for RNU6-786P Gene

No data available for Paralogs for RNU6-786P Gene

Variants for RNU6-786P Gene

Additional Variant Information for RNU6-786P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-786P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-786P Gene

Disorders for RNU6-786P Gene

No disorders were found for RNU6-786P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-786P Gene

Publications for RNU6-786P Gene

No publications were found for RNU6-786P Gene.

No data available for Mastermind for RNU6-786P Gene

Products for RNU6-786P Gene

Sources for RNU6-786P Gene