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Aliases for RNU6-782P Gene

Aliases for RNU6-782P Gene

  • RNA, U6 Small Nuclear 782, Pseudogene 2 3 5

External Ids for RNU6-782P Gene

Previous GeneCards Identifiers for RNU6-782P Gene

  • GC19P015258
  • GC00U935608

Summaries for RNU6-782P Gene

GeneCards Summary for RNU6-782P Gene

RNU6-782P (RNA, U6 Small Nuclear 782, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-782P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-782P Gene

Genomics for RNU6-782P Gene

GeneHancer (GH) Regulatory Elements for RNU6-782P Gene

Promoters and enhancers for RNU6-782P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J015143 Enhancer 0.3 ENCODE 600.7 -0.9 -890 1.1 ZBTB40 RNU6-782P OR10B1P
GH19J015194 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 11.6 +53.1 53061 6.7 MTA3 SP1 ZNF121 ZBTB7A KLF14 HDGF FOSL2 CREB1 GLIS2 ZBTB8A NOTCH3 AKAP8 BRD4 EPHX3 RNU6-782P ZNF333 TPM4 OR7C1 MIR6795 GC19M015202
GH19J015222 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +78.4 78434 2.9 SP1 ZNF121 CSDE1 ZNF384 SP7 ELF1 KLF14 PRDM1 EGR1 CREB1 ENSG00000269635 NOTCH3 RNU6-782P BRD4 OR10H5 ENSG00000273218 WIZ SYDE1 SLC1A6 EPHX3
GH19J015106 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 11.7 -37.2 -37162 3.5 ZNF652 ZNF384 GLIS2 POLR2A PKNOX1 ZBTB8A PRDM10 ZIC2 PATZ1 ZNF341 SYDE1 RNU6-782P GC19P015120
GH19J015295 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 10.3 +153.5 153495 5.7 ZNF652 CTCF ELF3 MLLT1 CEBPG RERE ZNF384 BACH1 TFE3 SP7 AKAP8 ZNF333 BRD4 EPHX3 NOTCH3 RASAL3 ENSG00000268189 SNRPGP15 RNU6-782P CYP4F24P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-782P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-782P Gene

Genomic Locations for RNU6-782P Gene
chr19:15,145,215-15,145,318
(GRCh38/hg38)
Size:
104 bases
Orientation:
Plus strand

Genomic View for RNU6-782P Gene

Genes around RNU6-782P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-782P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-782P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-782P Gene

Proteins for RNU6-782P Gene

Post-translational modifications for RNU6-782P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-782P Gene

Domains & Families for RNU6-782P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-782P Gene

Function for RNU6-782P Gene

Phenotypes From GWAS Catalog for RNU6-782P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-782P Gene

Localization for RNU6-782P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-782P Gene

Pathways & Interactions for RNU6-782P Gene

PathCards logo

SuperPathways for RNU6-782P Gene

No Data Available

Interacting Proteins for RNU6-782P Gene

Gene Ontology (GO) - Biological Process for RNU6-782P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-782P Gene

Drugs & Compounds for RNU6-782P Gene

No Compound Related Data Available

Transcripts for RNU6-782P Gene

mRNA/cDNA for RNU6-782P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-782P Gene

No ASD Table

Relevant External Links for RNU6-782P Gene

GeneLoc Exon Structure for
RNU6-782P
ECgene alternative splicing isoforms for
RNU6-782P

Expression for RNU6-782P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-782P Gene

Orthologs for RNU6-782P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-782P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 76 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 75 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 68 (a)
ManyToMany
Species where no ortholog for RNU6-782P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-782P Gene

ENSEMBL:
Gene Tree for RNU6-782P (if available)
TreeFam:
Gene Tree for RNU6-782P (if available)

Paralogs for RNU6-782P Gene

No data available for Paralogs for RNU6-782P Gene

Variants for RNU6-782P Gene

Additional Variant Information for RNU6-782P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-782P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-782P Gene

Disorders for RNU6-782P Gene

No disorders were found for RNU6-782P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-782P Gene

Publications for RNU6-782P Gene

No publications were found for RNU6-782P Gene.

No data available for External Links for RNU6-782P Gene

Products for RNU6-782P Gene

Sources for RNU6-782P Gene

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