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Aliases for RNU6-71P Gene

Subcategory (RNA class) for RNU6-71P Gene

snRNA

Aliases for RNU6-71P Gene

  • RNA, U6 Small Nuclear 71, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 71 2
  • RNU6-71 3

External Ids for RNU6-71P Gene

ORGUL Members for RNU6-71P Gene

Previous HGNC Symbols for RNU6-71P Gene

  • RNU6-71

Previous GeneCards Identifiers for RNU6-71P Gene

  • GC13P036844

Summaries for RNU6-71P Gene

GeneCards Summary for RNU6-71P Gene

RNU6-71P (RNA, U6 Small Nuclear 71, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-71P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-71P Gene

Genomics for RNU6-71P Gene

GeneHancer (GH) Regulatory Elements for RNU6-71P Gene

Promoters and enhancers for RNU6-71P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I035978 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.3 -287.4 -287363 2.4 CTCF MXI1 ZNF654 ZNF362 TRIM22 CEBPB REST RAD21 GATA3 JUND RNU6-71P DCLK1 MAB21L1 GC13P036065 LOC105370163
GH13I036163 Enhancer 1 ENCODE dbSUPER 10.8 -103.2 -103206 1.6 PKNOX1 MZF1 FEZF1 RFX5 ZNF213 ZNF366 OVOL3 CEBPB TSHZ1 ZEB2 DCLK1 RNU6-71P SOHLH2
GH13I036214 Promoter 0.9 EPDnew 11.1 -52.6 -52604 0.1 L3MBTL2 BHLHE40 NRF1 MNT POLR2A ZBTB33 MYC ZFX SETDB1 MGA SOHLH2 RNU6-71P CCDC169-SOHLH2 DCLK1
GH13I036156 Enhancer 0.8 ENCODE dbSUPER 10.2 -109.1 -109054 3 KLF17 CEBPB FEZF1 EP300 PRDM6 JUND MAFF ZNF366 FOXP2 MAFK DCLK1 CCDC169 SOHLH2 RNU6-71P
GH13I035987 Enhancer 0.6 ENCODE 11.2 -278.6 -278628 2.2 RFX1 CEBPB MNT CEBPG JUND GATA3 POLR2A POU5F1 RNU6-71P GC13P036065 LOC105370163 DCLK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-71P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-71P Gene

Genomic Locations for RNU6-71P Gene
chr13:36,267,168-36,267,274
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand
chr13:36,841,305-36,841,411
(GRCh37/hg19)

Genomic View for RNU6-71P Gene

Genes around RNU6-71P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-71P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-71P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-71P Gene

Proteins for RNU6-71P Gene

Post-translational modifications for RNU6-71P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-71P Gene

Domains & Families for RNU6-71P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-71P Gene

Function for RNU6-71P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-71P Gene

Localization for RNU6-71P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-71P Gene

Pathways & Interactions for RNU6-71P Gene

SuperPathways for RNU6-71P Gene

No Data Available

Interacting Proteins for RNU6-71P Gene

Gene Ontology (GO) - Biological Process for RNU6-71P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-71P Gene

Drugs & Compounds for RNU6-71P Gene

No Compound Related Data Available

Transcripts for RNU6-71P Gene

mRNA/cDNA for RNU6-71P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-71P Gene

No ASD Table

Relevant External Links for RNU6-71P Gene

GeneLoc Exon Structure for
RNU6-71P
ECgene alternative splicing isoforms for
RNU6-71P

Expression for RNU6-71P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-71P Gene

genes like me logo Genes that share expression patterns with RNU6-71P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-71P Gene

Orthologs for RNU6-71P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-71P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 80 (a)
OneToOne
Species where no ortholog for RNU6-71P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-71P Gene

ENSEMBL:
Gene Tree for RNU6-71P (if available)
TreeFam:
Gene Tree for RNU6-71P (if available)

Paralogs for RNU6-71P Gene

No data available for Paralogs for RNU6-71P Gene

Variants for RNU6-71P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-71P Gene

Variant ID Type Subtype PubMed ID
nsv525432 CNV loss 19592680

Additional Variant Information for RNU6-71P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-71P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-71P Gene

Disorders for RNU6-71P Gene

Additional Disease Information for RNU6-71P

No disorders were found for RNU6-71P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-71P Gene

Publications for RNU6-71P Gene

No publications were found for RNU6-71P Gene.

Products for RNU6-71P Gene

Sources for RNU6-71P Gene

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