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RNU6-6P Gene(Pseudogene)

RNA, U6 Small Nuclear 6, Pseudogene

GCID:
GC10P013259
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RNU6-6P Gene

Subcategory (RNA class) for RNU6-6P Gene

snRNA

Aliases for RNU6-6P Gene

  • RNA, U6 Small Nuclear 6, Pseudogene 2 3 5
  • RNA, U6B Small Nuclear 2 3
  • RNA, U6 Small Nuclear 6 2
  • RNU6-6 3
  • RNU6B 3
  • U6-6 3

External Ids for RNU6-6P Gene

ORGUL Members for RNU6-6P Gene

Previous HGNC Symbols for RNU6-6P Gene

  • RNU6B
  • RNU6-6

Summaries for RNU6-6P Gene

GeneCards Summary for RNU6-6P Gene

RNU6-6P (RNA, U6 Small Nuclear 6, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-6P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-6P Gene

Genomics for RNU6-6P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RNU6-6P Gene

Promoters and enhancers for RNU6-6P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10I013219 Enhancer 0.7 ENCODE 0.8 +2.9 2852 0.3 HDAC1 CTCF RB1 SAP130 TEAD4 MAX ARID4B SIN3A E4F1 RAD21 PHYH RNU6-6P UCMA GC10P013202
GH10I013220 Enhancer 0.4 ENCODE 0.8 +3.2 3227 0.2 CTCF E4F1 RNU6-6P UCMA GC10P013202
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-6P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-6P Gene

Genomic Locations for RNU6-6P Gene
chr10:13,217,269-13,217,375
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand
chr10:13,259,269-13,259,375
(GRCh37/hg19)

Genomic View for RNU6-6P Gene

Genes around RNU6-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-6P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-6P Gene

Proteins for RNU6-6P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-6P Gene

Domains & Families for RNU6-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-6P Gene

Function for RNU6-6P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-6P Gene

Localization for RNU6-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-6P Gene

Pathways & Interactions for RNU6-6P Gene

SuperPathways for RNU6-6P Gene

PathCards logo More details on SuperPathways for RNU6-6P
No Data Available

Interacting Proteins for RNU6-6P Gene

Gene Ontology (GO) - Biological Process for RNU6-6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-6P Gene

Drugs & Compounds for RNU6-6P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-6P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU6-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-6P Gene

No ASD Table

Relevant External Links for RNU6-6P Gene

GeneLoc Exon Structure for
RNU6-6P
ECgene alternative splicing isoforms for
RNU6-6P

Expression for RNU6-6P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-6P Gene

mRNA expression in normal human tissues for RNU6-6P Gene
mRNA expression by GTEx for RNU6-6P Gene
genes like me logo Genes that share expression patterns with RNU6-6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-6P Gene

Orthologs for RNU6-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-6P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia U6 34
  • 100 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia U6 34
  • 100 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm22295 34
  • 100 (a)
 OneToMany
Gm26317 34
  • 100 (a)
 OneToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia U6 34
  • 100 (a)
 ManyToMany
Species where no ortholog for RNU6-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-6P Gene

ENSEMBL:
Gene Tree for RNU6-6P (if available)
TreeFam:
Gene Tree for RNU6-6P (if available)

Paralogs for RNU6-6P Gene

No data available for Paralogs for RNU6-6P Gene

Variants for RNU6-6P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional Variant Information for RNU6-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-6P Gene

Disorders for RNU6-6P Gene

Additional Disease Information for RNU6-6P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RNU6-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-6P Gene

Publications for RNU6-6P Gene

  1. Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies. (PMID: 12711679) Domitrovich AM … Kunkel GR (Nucleic acids research 2003) 2 3 58
  2. Identification of suitable reference genes for hepatic microRNA quantitation. (PMID: 24606728) Lamba V … Lamba JK (BMC research notes 2014) 3 58
  3. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx JJ … Ophoff RA (Molecular psychiatry 2014) 3 58
  4. Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre. (PMID: 22246180) Rasche N … Lührmann R (The EMBO journal 2012) 3 58
  5. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3 58

Products for RNU6-6P Gene

Sources for RNU6-6P Gene

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