RNU6-6P Gene (Pseudogene)

RNA, U6 Small Nuclear 6, Pseudogene

GC10P013220
GIFtS:
9
See more...

Aliases for RNU6-6P Gene

Aliases for RNU6-6P Gene

  • RNA, U6 Small Nuclear 6, Pseudogene 2 3 5
  • RNA, U6B Small Nuclear 2 3
  • U6-6 2 3
  • RNA, U6 Small Nuclear 6 2
  • RNU6-6P 5
  • RNU6-6 3
  • RNU6B 3

External Ids for RNU6-6P Gene

Previous HGNC Symbols for RNU6-6P Gene

  • RNU6B
  • RNU6-6

Previous GeneCards Identifiers for RNU6-6P Gene

  • GC10P013259
  • GC10P013219

Summaries for RNU6-6P Gene

GeneCards Summary for RNU6-6P Gene

RNU6-6P (RNA, U6 Small Nuclear 6, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-6P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-6P Gene

Genomics for RNU6-6P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU6-6P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J013219 Enhancer 0.8 Ensembl ENCODE 0.7 +2.8 2832 1 CTCF TEAD4 JUND REST HDAC1 MGA HMBOX1 CTBP1 SMC3 TEAD1 PHYH RNU6-1-001 RNU6-6P UCMA MCM10
GH10J013234 Promoter/Enhancer 0.5 EPDnew Ensembl 0.4 +16.5 16532 2 UCMA RNU6-1-001 RNU6-6P MCM10
GH10J013232 Enhancer 0.2 CraniofacialAtlas 0.4 +15.2 15232 0.2 UCMA RNU6-1-001 RNU6-6P MCM10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-6P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-6P Gene

Genomic Locations for RNU6-6P Gene
chr10:13,217,269-13,217,375
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand
chr10:13,259,269-13,259,375
(GRCh37/hg19)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-6P Gene

Genes around RNU6-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-6P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-6P Gene

Proteins for RNU6-6P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-6P Gene

Domains & Families for RNU6-6P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-6P Gene

Function for RNU6-6P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU6-6P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-6P Gene

Localization for RNU6-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-6P Gene

Pathways & Interactions for RNU6-6P Gene

PathCards logo

SuperPathways for RNU6-6P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-6P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-6P Gene

Drugs & Compounds for RNU6-6P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-6P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU6-6P Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-6P Gene

No ASD Table

Relevant External Links for RNU6-6P Gene

GeneLoc Exon Structure for
RNU6-6P

Expression for RNU6-6P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-6P Gene

mRNA expression in normal human tissues for RNU6-6P Gene
mRNA expression by GTEx for RNU6-6P Gene
genes like me logo Genes that share expression patterns with RNU6-6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-6P Gene

Orthologs for RNU6-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-6P Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
 Mammalia U6 31
  • 100 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia U6 31
  • 100 (a)
 ManyToMany
Mouse
(Mus musculus)
 Mammalia Gm22295 31
  • 100 (a)
 OneToMany
Gm26317 31
  • 100 (a)
 OneToMany
Cow
(Bos Taurus)
 Mammalia U6 31
  • 100 (a)
 ManyToMany
Species where no ortholog for RNU6-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-6P Gene

ENSEMBL:
Gene Tree for RNU6-6P (if available)
TreeFam:
Gene Tree for RNU6-6P (if available)

Paralogs for RNU6-6P Gene

No data available for Paralogs for RNU6-6P Gene

Variants for RNU6-6P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional Variant Information for RNU6-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-6P Gene

Disorders for RNU6-6P Gene

Additional Disease Information for RNU6-6P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RNU6-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-6P Gene

Publications for RNU6-6P Gene

  1. Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies. (PMID: 12711679) Domitrovich AM … Kunkel GR (Nucleic acids research 2003) 2 3
  2. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx JJ … Ophoff RA (Molecular psychiatry 2014) 3
  3. Identification of suitable reference genes for hepatic microRNA quantitation. (PMID: 24606728) Lamba V … Lamba JK (BMC research notes 2014) 3
  4. Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre. (PMID: 22246180) Rasche N … Lührmann R (The EMBO journal 2012) 3
  5. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3

ExternalLinks

View latest publications for RNU6-6P gene in Mastermind

Products for RNU6-6P Gene

Sources for RNU6-6P Gene