Aliases for RNU6-686P Gene

Aliases for RNU6-686P Gene

  • RNA, U6 Small Nuclear 686, Pseudogene 2 3 5

External Ids for RNU6-686P Gene

Previous GeneCards Identifiers for RNU6-686P Gene

  • GC15P065614
  • GC00U935892
  • GC15P065260
  • GC15P065445
  • GC15P069497
  • GC15P069603
  • GC15P069656
  • GC15P065475
  • GC15P066315
  • GC15P066864
  • GC15P067392
  • GC15P067912
  • GC15P068403
  • GC15P068910
  • GC15P069386

Summaries for RNU6-686P Gene

GeneCards Summary for RNU6-686P Gene

RNU6-686P (RNA, U6 Small Nuclear 686, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-686P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-686P Gene

Genomics for RNU6-686P Gene

GeneHancer (GH) Regulatory Elements for RNU6-686P Gene

Promoters and enhancers for RNU6-686P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J065132 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 12.3 -96.6 -96561 3.4 EP300 ZBTB40 ZNF217 ZSCAN5C SIN3A TCF12 POLR2G SP1 GTF2E2 PHF8 PDCD7 lnc-KBTBD13-4 RNU6-686P CLPX CILP lnc-UBAP1L-2
GH15J065274 Enhancer 1 Ensembl ENCODE 12 +46.4 46440 6.2 ZNF217 FOS AFF1 KLF4 CTBP1 JUN CREB1 FOXA2 ZNF316 TRIM24 PARP16 IGDCC3 RNU5B-1 RNU6-686P CILP CLPX SNORA24B lnc-PARP16-2 lnc-CILP-1
GH15J065189 Enhancer 0.9 Ensembl ENCODE 12 -40.6 -40560 0.6 ZNF217 CTCF USF1 REST RAD21 TRIM22 SMC3 NR3C1 SAP130 MBD1 CILP SNORA24B RNU5A-1 PARP16 RNU6-686P RNU5B-1 IGDCC3 CLPX
GH15J065257 Enhancer 0.7 Ensembl ENCODE 12.8 +28.9 28889 3.5 ZIC2 CEBPG PBX2 ZNF189 FEZF1 MEIS2 CEBPB ATF3 BCL6B ZNF362 PARP16 IGDCC3 RNU6-686P CILP SNORA24B RNU5A-1 CLPX RNU5B-1 MIR1272 lnc-CILP-1
GH15J065254 Enhancer 0.6 Ensembl ENCODE 12.2 +24.9 24939 1.6 RFX1 SPI1 ZNF398 PRDM1 BMI1 PARP16 RNU6-686P CILP SNORA24B RNU5A-1 CLPX RNU5B-1 IGDCC3 MIR1272 lnc-CILP-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-686P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-686P Gene

Genomic Locations for RNU6-686P Gene
chr15:65,229,861-65,229,967
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-686P Gene

Genes around RNU6-686P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-686P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-686P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-686P Gene

Proteins for RNU6-686P Gene

Post-translational modifications for RNU6-686P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-686P Gene

Domains & Families for RNU6-686P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-686P Gene

Function for RNU6-686P Gene

Phenotypes From GWAS Catalog for RNU6-686P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-686P Gene

Localization for RNU6-686P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-686P Gene

Pathways & Interactions for RNU6-686P Gene

PathCards logo

SuperPathways for RNU6-686P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-686P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-686P Gene

Drugs & Compounds for RNU6-686P Gene

No Compound Related Data Available

Transcripts for RNU6-686P Gene

mRNA/cDNA for RNU6-686P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-686P Gene

No ASD Table

Relevant External Links for RNU6-686P Gene

GeneLoc Exon Structure for
RNU6-686P

Expression for RNU6-686P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-686P Gene

genes like me logo Genes that share expression patterns with RNU6-686P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-686P Gene

Orthologs for RNU6-686P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-686P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31 31
  • 99 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25142 31
  • 89 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 31
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 31
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U6 31
  • 80 (a)
ManyToMany
Species where no ortholog for RNU6-686P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-686P Gene

ENSEMBL:
Gene Tree for RNU6-686P (if available)
TreeFam:
Gene Tree for RNU6-686P (if available)

Paralogs for RNU6-686P Gene

No data available for Paralogs for RNU6-686P Gene

Variants for RNU6-686P Gene

Additional Variant Information for RNU6-686P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-686P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-686P Gene

Disorders for RNU6-686P Gene

No disorders were found for RNU6-686P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-686P Gene

Publications for RNU6-686P Gene

No publications were found for RNU6-686P Gene.

Products for RNU6-686P Gene

Sources for RNU6-686P Gene