Aliases for RNU6-680P Gene

Aliases for RNU6-680P Gene

  • RNA, U6 Small Nuclear 680, Pseudogene 2 3 5
  • RNU6-680P 5

External Ids for RNU6-680P Gene

Previous GeneCards Identifiers for RNU6-680P Gene

  • GC05M075009
  • GC00U935967

Summaries for RNU6-680P Gene

GeneCards Summary for RNU6-680P Gene

RNU6-680P (RNA, U6 Small Nuclear 680, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-680P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-680P Gene

Genomics for RNU6-680P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-680P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J075709 Enhancer 0.5 Ensembl 600.7 -1.1 -1102 1.8 ZNF316 MAFG SPI1 MAFK MAFF EMSY RF00026-873 RNU6-680P POC5 LOC441087 lnc-COL4A3BP-3 ANKDD1B
GH05J075708 Enhancer 0.5 Ensembl 600.7 +1.4 1398 0.4 JUND DPF2 FOSL1 ATF3 EMSY SMARCA4 RF00026-873 RNU6-680P POC5 lnc-COL4A3BP-3 piR-61532-243 ANKDD1B
GH05J075681 Enhancer 0.8 Ensembl ENCODE 11.4 +28.4 28374 0.8 CTCF PRDM1 RAD21 TRIM22 YY1 ZNF592 SMC3 ARNT ZNF654 TBP POC5 RNU6-680P ANKRD31 lnc-COL4A3BP-2 HSALNG0042749 ANKDD1B
GH05J075656 Enhancer 0.7 ENCODE CraniofacialAtlas 10.2 +52.8 52823 0.8 PRDM10 ZNF600 ZNF341 SP2 ZXDB POLR2A ZNF335 ZNF18 ZFP91 ZNF366 ANKDD1B RNU6-680P LOC107986424 piR-45874-186 POC5
GH05J075535 Enhancer 0.6 Ensembl 11.1 +172.1 172098 4.2 CREB1 RFX1 ZIC2 BMI1 OSR2 ZFHX2 RFX5 CEBPB EGR2 CTCF RF00066-153 RNU7-175P RNU6-680P CERT1 POC5 GCNT4 ANKDD1B POLK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-680P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-680P Gene

Genomic Locations for RNU6-680P Gene
chr5:75,709,495-75,709,599
(GRCh38/hg38)
Size:
105 bases
Orientation:
Minus strand

Genomic View for RNU6-680P Gene

Genes around RNU6-680P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-680P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-680P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-680P Gene

Proteins for RNU6-680P Gene

Post-translational modifications for RNU6-680P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-680P Gene

Domains & Families for RNU6-680P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-680P Gene

Function for RNU6-680P Gene

Phenotypes From GWAS Catalog for RNU6-680P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-680P Gene

Localization for RNU6-680P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-680P Gene

Pathways & Interactions for RNU6-680P Gene

PathCards logo

SuperPathways for RNU6-680P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-680P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-680P Gene

Drugs & Compounds for RNU6-680P Gene

No Compound Related Data Available

Transcripts for RNU6-680P Gene

mRNA/cDNA for RNU6-680P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-680P Gene

No ASD Table

Relevant External Links for RNU6-680P Gene

GeneLoc Exon Structure for
RNU6-680P

Expression for RNU6-680P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-680P Gene

genes like me logo Genes that share expression patterns with RNU6-680P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-680P Gene

Orthologs for RNU6-680P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-680P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 98 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm24086 31
  • 79 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U6 31
  • 75 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia U6 31
  • 75 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia U6 31
  • 82 (a)
OneToMany
Species where no ortholog for RNU6-680P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-680P Gene

ENSEMBL:
Gene Tree for RNU6-680P (if available)
TreeFam:
Gene Tree for RNU6-680P (if available)

Paralogs for RNU6-680P Gene

No data available for Paralogs for RNU6-680P Gene

Variants for RNU6-680P Gene

Additional Variant Information for RNU6-680P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-680P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-680P Gene

Disorders for RNU6-680P Gene

No disorders were found for RNU6-680P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-680P Gene

Publications for RNU6-680P Gene

No publications were found for RNU6-680P Gene.

No data available for Mastermind for RNU6-680P Gene

Products for RNU6-680P Gene

Sources for RNU6-680P Gene