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Aliases for RNU6-638P Gene

Aliases for RNU6-638P Gene

  • RNA, U6 Small Nuclear 638, Pseudogene 2 3 5

External Ids for RNU6-638P Gene

Previous GeneCards Identifiers for RNU6-638P Gene

  • GC17M076694
  • GC00U934501

Summaries for RNU6-638P Gene

GeneCards Summary for RNU6-638P Gene

RNU6-638P (RNA, U6 Small Nuclear 638, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-638P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-638P Gene

Genomics for RNU6-638P Gene

GeneHancer (GH) Regulatory Elements for RNU6-638P Gene

Promoters and enhancers for RNU6-638P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I078696 Enhancer 0.9 ENCODE dbSUPER 550.8 -0.9 -910 1.8 SMARCA5 SRF ZNF687 BACH1 EBF1 DPF2 ZNF217 POLR2A TARDBP IKZF1 RNU6-638P USP36 CYTH1
GH17I078694 Enhancer 0.9 ENCODE dbSUPER 550.8 +1.4 1431 1.1 EBF1 BMI1 BATF IRF4 RELA NFATC1 ATF7 ETV6 BCLAF1 IKZF2 RNU6-638P USP36 DNAH17 ENSG00000279570 CYTH1
GH17I078697 Enhancer 0.6 ENCODE dbSUPER 550.8 +0.1 143 0.2 ZNF217 ZSCAN4 PAX8 RNU6-638P ENSG00000279570 CYTH1
GH17I078777 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.8 -84.9 -84889 8.8 HDGF PKNOX1 FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 CYTH1 USP36 ENGASE RNU6-638P TNRC6C-AS1
GH17I078733 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -50.1 -50079 27 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZNF585B GLIS1 RCOR2 USP36 CYTH1 SOCS3 RNU6-638P TNRC6C DNAH17 ENGASE TNRC6C-AS1 PGS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-638P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-638P Gene

Genomic Locations for RNU6-638P Gene
chr17:78,696,694-78,696,797
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-638P Gene

Genes around RNU6-638P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-638P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-638P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-638P Gene

Proteins for RNU6-638P Gene

Post-translational modifications for RNU6-638P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-638P Gene

Domains & Families for RNU6-638P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-638P Gene

Function for RNU6-638P Gene

Phenotypes From GWAS Catalog for RNU6-638P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-638P Gene

Localization for RNU6-638P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-638P Gene

Pathways & Interactions for RNU6-638P Gene

SuperPathways for RNU6-638P Gene

No Data Available

Interacting Proteins for RNU6-638P Gene

Gene Ontology (GO) - Biological Process for RNU6-638P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-638P Gene

Drugs & Compounds for RNU6-638P Gene

No Compound Related Data Available

Transcripts for RNU6-638P Gene

mRNA/cDNA for RNU6-638P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-638P Gene

No ASD Table

Relevant External Links for RNU6-638P Gene

GeneLoc Exon Structure for
RNU6-638P
ECgene alternative splicing isoforms for
RNU6-638P

Expression for RNU6-638P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-638P Gene

genes like me logo Genes that share expression patterns with RNU6-638P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-638P Gene

Orthologs for RNU6-638P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-638P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24060 34
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 67 (a)
OneToMany
Species where no ortholog for RNU6-638P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-638P Gene

ENSEMBL:
Gene Tree for RNU6-638P (if available)
TreeFam:
Gene Tree for RNU6-638P (if available)

Paralogs for RNU6-638P Gene

No data available for Paralogs for RNU6-638P Gene

Variants for RNU6-638P Gene

Additional Variant Information for RNU6-638P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-638P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-638P Gene

Disorders for RNU6-638P Gene

No disorders were found for RNU6-638P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-638P Gene

Publications for RNU6-638P Gene

No publications were found for RNU6-638P Gene.

Products for RNU6-638P Gene

Sources for RNU6-638P Gene

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