RNU6-579P Gene (Pseudogene)

RNA, U6 Small Nuclear 579, Pseudogene

GC02P133333
GIFtS:
6
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Aliases for RNU6-579P Gene

Aliases for RNU6-579P Gene

  • RNA, U6 Small Nuclear 579, Pseudogene 2 3 5
  • RNU6-579P 5

External Ids for RNU6-579P Gene

Previous GeneCards Identifiers for RNU6-579P Gene

  • GC02P134093
  • GC00U935585

Summaries for RNU6-579P Gene

GeneCards Summary for RNU6-579P Gene

RNU6-579P (RNA, U6 Small Nuclear 579, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-579P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-579P Gene

Genomics for RNU6-579P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU6-579P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J133334 Enhancer 0.3 Ensembl 250.7 +1.2 1172 0.8 CEBPB EP300 RNU6-579P RF00026-580 piR-52368-071 NCKAP5 LYPD1
GH02J133285 Enhancer 1 Ensembl ENCODE dbSUPER 10.8 -46.5 -46496 3.5 CEBPB EP300 ZNF843 PRDM6 SCRT1 MAFF ATF2 DPF2 ZNF133 BCL6B RNU6-579P ENSG00000272769 NCKAP5-AS2 RF00026-580 NCKAP5 LYPD1
GH02J133302 Enhancer 0.8 Ensembl ENCODE dbSUPER 11.6 -30.5 -30456 1.1 MAFF ZNF316 MAFK FOXA1 NFE2L2 FOS EMSY RNU6-579P RF00026-580 NCKAP5-AS2 NCKAP5 LYPD1
GH02J133376 Enhancer 0.6 Ensembl ENCODE 10.6 +44.3 44319 3.2 MAFK EGR2 FOS RNU6-579P piR-52368-071 NCKAP5 LYPD1
GH02J133411 Enhancer 0.5 Ensembl 10.4 +78.7 78671 1.8 CEBPB CTCF ZBTB40 RAD21 ZNF579 RNU6-579P RN7SKP154 NCKAP5-IT1 lnc-LYPD1-4 NCKAP5 LYPD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-579P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-579P Gene

Latest Assembly
chr2:133,333,829-133,333,930
(GRCh38/hg38)
Size:
102 bases
Orientation:
Plus strand

Previous Assembly
chr2:134,091,401-134,091,502
(GRCh37/hg19 by Entrez Gene)
Size:
102 bases
Orientation:
Plus strand

chr2:134,091,401-134,091,502
(GRCh37/hg19 by Ensembl)
Size:
102 bases
Orientation:
Plus strand

Genomic View for RNU6-579P Gene

Genes around RNU6-579P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-579P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-579P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-579P Gene

Proteins for RNU6-579P Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for RNU6-579P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-579P Gene

Domains & Families for RNU6-579P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-579P Gene

Function for RNU6-579P Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-579P Gene

Localization for RNU6-579P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-579P Gene

Pathways & Interactions for RNU6-579P Gene

PathCards logo

SuperPathways for RNU6-579P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-579P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-579P Gene

Drugs & Compounds for RNU6-579P Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for RNU6-579P Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for RNU6-579P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-579P Gene

No ASD Table

Relevant External Links for RNU6-579P Gene

GeneLoc Exon Structure for
RNU6-579P

Expression for RNU6-579P Gene

Products:

  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-579P Gene

mRNA expression in normal human tissues for RNU6-579P Gene
mRNA expression by GTEx for RNU6-579P Gene
genes like me logo Genes that share expression patterns with RNU6-579P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-579P Gene

Orthologs for RNU6-579P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-579P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U6 31
  • 84 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia U6 31
  • 68 (a)
 ManyToMany
Mouse
(Mus musculus)
 Mammalia Gm23585 31
  • 65 (a)
 OneToOne
Species where no ortholog for RNU6-579P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-579P Gene

ENSEMBL:
Gene Tree for RNU6-579P (if available)
TreeFam:
Gene Tree for RNU6-579P (if available)

Paralogs for RNU6-579P Gene

No data available for Paralogs for RNU6-579P Gene

Variants for RNU6-579P Gene

Additional Variant Information for RNU6-579P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-579P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-579P Gene

Disorders for RNU6-579P Gene

No disorders were found for RNU6-579P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-579P Gene

Publications for RNU6-579P Gene

No publications were found for RNU6-579P Gene.

No data available for Mastermind for RNU6-579P Gene

Products for RNU6-579P Gene

Sources for RNU6-579P Gene