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Aliases for RNU6-567P Gene

Subcategory (RNA class) for RNU6-567P Gene

snRNA

Aliases for RNU6-567P Gene

  • RNA, U6 Small Nuclear 567, Pseudogene 2 3 5

External Ids for RNU6-567P Gene

ORGUL Members for RNU6-567P Gene

Previous GeneCards Identifiers for RNU6-567P Gene

  • GC18P057687
  • GC00U935562

Summaries for RNU6-567P Gene

GeneCards Summary for RNU6-567P Gene

RNU6-567P (RNA, U6 Small Nuclear 567, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-567P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-567P Gene

Genomics for RNU6-567P Gene

GeneHancer (GH) Regulatory Elements for RNU6-567P Gene

Promoters and enhancers for RNU6-567P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J060018 Enhancer 0.7 Ensembl ENCODE 600.7 +1.5 1476 3 SP1 ZBTB20 FOS FOSL2 JUND RNU6-567P LOC105372152
GH18J060052 Enhancer 1.1 Ensembl ENCODE 10.8 +35.1 35094 2.6 CC2D1A GTF2F1 NCOA3 BACH1 MAFK TRIM24 KLF14 SMARCA4 MTA1 FOSL2 RNU6-567P GC18P060056 GC18P060039
GH18J059837 Enhancer 1 Ensembl ENCODE 9.8 -180.9 -180924 0.6 CTCF CEBPG SP7 RAD21 IKZF1 ZBTB33 IKZF2 CEBPA ZNF143 REST GC18P059839 PMAIP1 RNU6-567P CCBE1 LOC390860
GH18J059835 Enhancer 0.9 Ensembl ENCODE 9.8 -183.6 -183624 3.2 SP1 ZSCAN21 RELA PRDM1 MZF1 IKZF1 ZNF600 PRDM10 IKZF2 ZIC2 PMAIP1 RNU6-567P CCBE1 GC18P059839 LOC390860
GH18J060044 Enhancer 0.7 Ensembl ENCODE 11.8 +26.0 25985 1.6 POLR2A SP1 FOS FOSL2 JUND RNU6-567P GC18P060039 GC18P060056 LOC105372152
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-567P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-567P Gene

Genomic Locations for RNU6-567P Gene
chr18:60,018,625-60,018,731
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-567P Gene

Genes around RNU6-567P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-567P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-567P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-567P Gene

Proteins for RNU6-567P Gene

Post-translational modifications for RNU6-567P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-567P Gene

Domains & Families for RNU6-567P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-567P Gene

Function for RNU6-567P Gene

Phenotypes From GWAS Catalog for RNU6-567P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-567P Gene

Localization for RNU6-567P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-567P Gene

Pathways & Interactions for RNU6-567P Gene

PathCards logo

SuperPathways for RNU6-567P Gene

No Data Available

Interacting Proteins for RNU6-567P Gene

Gene Ontology (GO) - Biological Process for RNU6-567P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-567P Gene

Drugs & Compounds for RNU6-567P Gene

No Compound Related Data Available

Transcripts for RNU6-567P Gene

mRNA/cDNA for RNU6-567P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-567P Gene

No ASD Table

Relevant External Links for RNU6-567P Gene

GeneLoc Exon Structure for
RNU6-567P
ECgene alternative splicing isoforms for
RNU6-567P

Expression for RNU6-567P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-567P Gene

Orthologs for RNU6-567P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-567P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 77 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 67 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23469 35
  • 65 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 62 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U6 35
  • 67 (a)
OneToMany
Species where no ortholog for RNU6-567P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-567P Gene

ENSEMBL:
Gene Tree for RNU6-567P (if available)
TreeFam:
Gene Tree for RNU6-567P (if available)

Paralogs for RNU6-567P Gene

No data available for Paralogs for RNU6-567P Gene

Variants for RNU6-567P Gene

Additional Variant Information for RNU6-567P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-567P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-567P Gene

Disorders for RNU6-567P Gene

No disorders were found for RNU6-567P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-567P Gene

Publications for RNU6-567P Gene

No publications were found for RNU6-567P Gene.

Products for RNU6-567P Gene

Sources for RNU6-567P Gene

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