Aliases for RNU6-537P Gene

Aliases for RNU6-537P Gene

  • RNA, U6 Small Nuclear 537, Pseudogene 2 3 5

External Ids for RNU6-537P Gene

Previous GeneCards Identifiers for RNU6-537P Gene

  • GC01P011214
  • GC00U934456

Summaries for RNU6-537P Gene

GeneCards Summary for RNU6-537P Gene

RNU6-537P (RNA, U6 Small Nuclear 537, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-537P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-537P Gene

Genomics for RNU6-537P Gene

GeneHancer (GH) Regulatory Elements for RNU6-537P Gene

Promoters and enhancers for RNU6-537P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J011150 Enhancer 0.7 Ensembl ENCODE 750.6 -0.2 -223 2.3 SP1 RXRA JUND ATF3 YY1 HNF4A RNU6-537P RF00026-006 ANGPTL7 C1orf127 ENSG00000226849 MTOR-AS1 MTOR
GH01J011151 Enhancer 0.2 ENCODE 750.6 -1.8 -1781 0.2 RNU6-537P RF00026-006 MTOR-AS1 MTOR
GH01J011245 Enhancer 0.3 ENCODE 10.1 +93.8 93842 2 ZNF121 ZNF507 MTOR TARDBP UBIAD1 SRM MTOR-AS1 EXOSC10 RNU6-537P C1orf127 ENSG00000226849 piR-56759-004
GH01J011156 Enhancer 0.8 Ensembl ENCODE 0.4 +5.9 5863 3.6 SP1 ZBTB8A FOS YY1 ZNF623 ZC3H11A ZFP64 HNF4A JUND MAX ENSG00000226849 TARDBP EXOSC10 ANGPTL7 MTOR C1orf127 piR-61240-001 RF00026-006 RNU6-537P
GH01J011147 Enhancer 0.3 Ensembl 0.6 -4.6 -4649 1.8 HLF RCOR1 MTOR MTOR-AS1 RNU6-537P RF00026-006
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-537P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-537P Gene

Genomic Locations for RNU6-537P Gene
chr1:11,152,350-11,152,452
(GRCh38/hg38)
Size:
103 bases
Orientation:
Plus strand

Genomic View for RNU6-537P Gene

Genes around RNU6-537P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-537P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-537P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-537P Gene

Proteins for RNU6-537P Gene

Post-translational modifications for RNU6-537P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-537P Gene

Domains & Families for RNU6-537P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-537P Gene

Function for RNU6-537P Gene

Phenotypes From GWAS Catalog for RNU6-537P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-537P Gene

Localization for RNU6-537P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-537P Gene

Pathways & Interactions for RNU6-537P Gene

PathCards logo

SuperPathways for RNU6-537P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-537P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-537P Gene

Drugs & Compounds for RNU6-537P Gene

No Compound Related Data Available

Transcripts for RNU6-537P Gene

mRNA/cDNA for RNU6-537P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-537P Gene

No ASD Table

Relevant External Links for RNU6-537P Gene

GeneLoc Exon Structure for
RNU6-537P
ECgene alternative splicing isoforms for
RNU6-537P

Expression for RNU6-537P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-537P Gene

genes like me logo Genes that share expression patterns with RNU6-537P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-537P Gene

Orthologs for RNU6-537P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-537P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 33
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 33
  • 88 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 33
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26226 33
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U6 33
  • 92 (a)
ManyToMany
Species where no ortholog for RNU6-537P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-537P Gene

ENSEMBL:
Gene Tree for RNU6-537P (if available)
TreeFam:
Gene Tree for RNU6-537P (if available)

Paralogs for RNU6-537P Gene

No data available for Paralogs for RNU6-537P Gene

Variants for RNU6-537P Gene

Additional Variant Information for RNU6-537P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-537P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-537P Gene

Disorders for RNU6-537P Gene

No disorders were found for RNU6-537P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-537P Gene

Publications for RNU6-537P Gene

No publications were found for RNU6-537P Gene.

No data available for External Links for RNU6-537P Gene

Products for RNU6-537P Gene

Sources for RNU6-537P Gene