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Aliases for RNU6-534P Gene

Subcategory (RNA class) for RNU6-534P Gene

snRNA

Aliases for RNU6-534P Gene

  • RNA, U6 Small Nuclear 534, Pseudogene 2 3 5

External Ids for RNU6-534P Gene

Previous GeneCards Identifiers for RNU6-534P Gene

  • GC07P007948
  • GC00U935993

Summaries for RNU6-534P Gene

GeneCards Summary for RNU6-534P Gene

RNU6-534P (RNA, U6 Small Nuclear 534, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-534P Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

View fRNAdb secondary structures for RNU6-534P

Additional gene information for RNU6-534P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-534P Gene

Genomics for RNU6-534P Gene

GeneHancer (GH) Regulatory Elements for RNU6-534P Gene

Promoters and enhancers for RNU6-534P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I007908 Enhancer 0.3 ENCODE 0.8 +2.9 2906 1.7 MITF CCNB2P1 ENSG00000234141 ENSG00000272894 RNU6-534P ENSG00000283549 UMAD1
GH07I007867 Enhancer 0.8 Ensembl ENCODE 0.3 -38.1 -38070 1.7 SMARCE1 HDAC1 L3MBTL2 TEAD4 REST ZEB2 IKZF1 IKZF2 MGA SPI1 GLCCI1 UMAD1 LOC100505921 RNU6-534P RPL23AP51 ENSG00000283549
GH07I007860 Enhancer 0.8 ENCODE 0.3 -45.0 -44951 1.3 FOXA2 MZF1 RAD21 RARA ETS1 YY1 FOS RXRA CEBPB GATAD2B GLCCI1 LOC100505921 RNU6-534P RPL23AP51 ENSG00000283549 UMAD1
GH07I007815 Enhancer 0.9 Ensembl ENCODE 0.2 -90.1 -90084 1.9 SMAD1 BMI1 BATF IRF4 RELA POLR2A NFATC1 ATF7 ETV6 FOS GLCCI1 LOC100505921 RPL23AP51 RNU6-534P UMAD1 ENSG00000283549
GH07I007820 Enhancer 0.8 ENCODE 0.2 -85.6 -85619 0.9 PKNOX1 BACH1 BMI1 BATF IRF4 NFATC1 ZNF207 ATF7 ZSCAN29 ETV6 GLCCI1 LOC100505921 RPL23AP51 RNU6-534P ENSG00000283549 UMAD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-534P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-534P Gene

Genomic Locations for RNU6-534P Gene
chr7:7,906,519-7,906,624
(GRCh38/hg38)
Size:
106 bases
Orientation:
Plus strand

Genomic View for RNU6-534P Gene

Genes around RNU6-534P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-534P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-534P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-534P Gene

ORGUL Member Location for RNU6-534P Gene

ORGUL Member Location for RNU6-534P gene

Proteins for RNU6-534P Gene

Post-translational modifications for RNU6-534P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-534P Gene

Domains & Families for RNU6-534P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-534P Gene

Function for RNU6-534P Gene

Phenotypes From GWAS Catalog for RNU6-534P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-534P Gene

Localization for RNU6-534P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-534P Gene

Pathways & Interactions for RNU6-534P Gene

SuperPathways for RNU6-534P Gene

No Data Available

Interacting Proteins for RNU6-534P Gene

Gene Ontology (GO) - Biological Process for RNU6-534P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-534P Gene

Drugs & Compounds for RNU6-534P Gene

No Compound Related Data Available

Transcripts for RNU6-534P Gene

fRNAdb Secondary structures for RNU6-534P Gene

  • FR040241

mRNA/cDNA for RNU6-534P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-534P Gene

No ASD Table

Relevant External Links for RNU6-534P Gene

GeneLoc Exon Structure for
RNU6-534P
ECgene alternative splicing isoforms for
RNU6-534P

Expression for RNU6-534P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-534P Gene

genes like me logo Genes that share expression patterns with RNU6-534P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-534P Gene

Orthologs for RNU6-534P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-534P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 74 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 73 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 63 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26022 34
  • 57 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U6 34
  • 69 (a)
OneToMany
Species where no ortholog for RNU6-534P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-534P Gene

ENSEMBL:
Gene Tree for RNU6-534P (if available)
TreeFam:
Gene Tree for RNU6-534P (if available)

Paralogs for RNU6-534P Gene

No data available for Paralogs for RNU6-534P Gene

Variants for RNU6-534P Gene

Additional Variant Information for RNU6-534P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-534P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-534P Gene

Disorders for RNU6-534P Gene

No disorders were found for RNU6-534P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-534P Gene

Publications for RNU6-534P Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-534P Gene

Sources for RNU6-534P Gene

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