Aliases for RNU6-522P Gene

Aliases for RNU6-522P Gene

  • RNA, U6 Small Nuclear 522, Pseudogene 2 3 5
  • RNU6-522P 5

External Ids for RNU6-522P Gene

Previous GeneCards Identifiers for RNU6-522P Gene

  • GC00U935734

Summaries for RNU6-522P Gene

GeneCards Summary for RNU6-522P Gene

RNU6-522P (RNA, U6 Small Nuclear 522, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-522P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-522P Gene

Genomics for RNU6-522P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-522P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J015312 Enhancer 1 FANTOM5 ENCODE dbSUPER 600.7 -1.8 -1794 2.2 PRDM10 POLR2A ZNF600 ZNF341 EED RUNX3 OSR2 ZBTB17 ELF1 NBN RF00017-5301 RF00026-917 RNU6-522P JARID2 JARID2-AS1 ENSG00000271888 MYLIP DTNBP1 RF00017-5294
GH06J015315 Promoter 0.4 Ensembl 600.7 +0.5 481 0.4 ZNF664 RF00026-917 RNU6-522P RNU6-645P RF00026-918 JARID2 DTNBP1 RF00017-5294
GH06J015263 Promoter/Enhancer 1.8 UCNEbase Ensembl ENCODE dbSUPER 11.5 -47.9 -47872 6.4 GATAD2A PRDM10 TFE3 LEF1 SOX13 IKZF1 KDM1A JUND DDX20 ZIC2 RNU6-645P JARID2 RNU6-522P ENSG00000271888 DTNBP1 piR-47138 piR-57460-574 RF00017-5294
GH06J015252 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 12.7 -60.4 -60404 4.7 ATF7 PRDM10 ZNF629 IKZF1 CTCF JUND FOXA1 ZNF143 RELA ZIC2 RNU6-522P RNU6-645P JARID2 ENSG00000271888 piR-57460-574 piR-47138 RF00017-5294 DTNBP1
GH06J015398 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 11.4 +86.7 86735 6.4 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 FOXA1 ZSCAN4 PKNOX1 POLR2A MTA1 RNU6-522P DTNBP1 piR-54764-532 lnc-DTNBP1-8 JARID2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-522P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-522P Gene

Genomic Locations for RNU6-522P Gene
chr6:15,314,920-15,315,026
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-522P Gene

Genes around RNU6-522P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-522P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-522P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-522P Gene

Proteins for RNU6-522P Gene

Post-translational modifications for RNU6-522P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-522P Gene

Domains & Families for RNU6-522P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-522P Gene

Function for RNU6-522P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-522P Gene

Localization for RNU6-522P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-522P Gene

Pathways & Interactions for RNU6-522P Gene

PathCards logo

SuperPathways for RNU6-522P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-522P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-522P Gene

Drugs & Compounds for RNU6-522P Gene

No Compound Related Data Available

Transcripts for RNU6-522P Gene

mRNA/cDNA for RNU6-522P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-522P Gene

No ASD Table

Relevant External Links for RNU6-522P Gene

GeneLoc Exon Structure for
RNU6-522P

Expression for RNU6-522P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-522P Gene

genes like me logo Genes that share expression patterns with RNU6-522P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-522P Gene

Orthologs for RNU6-522P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-522P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 100 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm23003 31
  • 88 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U6 31
  • 88 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 78 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia U6 31
  • 75 (a)
ManyToMany
Species where no ortholog for RNU6-522P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-522P Gene

ENSEMBL:
Gene Tree for RNU6-522P (if available)
TreeFam:
Gene Tree for RNU6-522P (if available)

Paralogs for RNU6-522P Gene

No data available for Paralogs for RNU6-522P Gene

Variants for RNU6-522P Gene

Additional Variant Information for RNU6-522P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-522P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-522P Gene

Disorders for RNU6-522P Gene

No disorders were found for RNU6-522P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-522P Gene

Publications for RNU6-522P Gene

No publications were found for RNU6-522P Gene.

Products for RNU6-522P Gene

Sources for RNU6-522P Gene