Aliases for RNU6-494P Gene

Aliases for RNU6-494P Gene

  • RNA, U6 Small Nuclear 494, Pseudogene 2 3 5
  • RNU6-494P 5

External Ids for RNU6-494P Gene

Previous GeneCards Identifiers for RNU6-494P Gene

  • GC12M032631
  • GC00U935126

Summaries for RNU6-494P Gene

GeneCards Summary for RNU6-494P Gene

RNU6-494P (RNA, U6 Small Nuclear 494, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-494P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-494P Gene

Genomics for RNU6-494P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-494P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J032477 Enhancer 0.6 ENCODE dbSUPER 250.7 -1.3 -1290 2.8 NFE2 ZNF18 CHD2 RNU6-494P DNM1L FGD4 RF00017-1127 NONHSAG010848.2
GH12J032532 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12 -57.2 -57174 4.5 CEBPA FOXA1 ZIC2 HOMEZ KDM6A THAP11 CEBPB SIN3A FOXA2 SMAD4 FGD4 RNU6-494P DNM1L ENSG00000257511 piR-39099-066 piR-56759-113
GH12J032444 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.6 +30.6 30570 5.8 HOMEZ THAP11 CEBPB REST CUX1 FOXA2 SAP130 EP300 ZNF341 GABPA FGD4 RNU6-494P ENSG00000207176 piR-56883-044 HSALNG0090273 NONHSAG010848.2 DNM1L
GH12J032583 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -110.2 -110230 11.4 MAFF JUND ZNF316 FOSL1 SPI1 POLR2A MAFK MYC MAX MAFG RNU6-494P DNM1L BICD1 piR-57403 HSALNG0090277 FGD4
GH12J032512 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.9 -37.1 -37121 5.2 IKZF1 HES1 BHLHE40 TAL1 RXRA FOSL1 HNF4A NRF1 FOXM1 TCF12 RNU6-494P ENSG00000257511 HSALNG0090276 piR-44593 FGD4 DNM1L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-494P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-494P Gene

Latest Assembly
chr12:32,477,382-32,477,471
(GRCh38/hg38)
Size:
90 bases
Orientation:
Minus strand

Previous Assembly
chr12:32,630,316-32,630,405
(GRCh37/hg19 by Entrez Gene)
Size:
90 bases
Orientation:
Minus strand

chr12:32,630,316-32,630,405
(GRCh37/hg19 by Ensembl)
Size:
90 bases
Orientation:
Minus strand

Genomic View for RNU6-494P Gene

Genes around RNU6-494P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-494P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-494P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-494P Gene

Proteins for RNU6-494P Gene

Post-translational modifications for RNU6-494P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-494P Gene

Domains & Families for RNU6-494P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-494P Gene

Function for RNU6-494P Gene

Phenotypes From GWAS Catalog for RNU6-494P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-494P Gene

Localization for RNU6-494P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-494P Gene

Pathways & Interactions for RNU6-494P Gene

PathCards logo

SuperPathways for RNU6-494P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-494P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-494P Gene

Drugs & Compounds for RNU6-494P Gene

No Compound Related Data Available

Transcripts for RNU6-494P Gene

mRNA/cDNA for RNU6-494P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-494P Gene

No ASD Table

Relevant External Links for RNU6-494P Gene

GeneLoc Exon Structure for
RNU6-494P

Expression for RNU6-494P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-494P Gene

genes like me logo Genes that share expression patterns with RNU6-494P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-494P Gene

Orthologs for RNU6-494P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-494P Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
Mammalia U6 31
  • 73 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U6 31
  • 72 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm26327 31
  • 70 (a)
OneToMany
Species where no ortholog for RNU6-494P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-494P Gene

ENSEMBL:
Gene Tree for RNU6-494P (if available)
TreeFam:
Gene Tree for RNU6-494P (if available)

Paralogs for RNU6-494P Gene

No data available for Paralogs for RNU6-494P Gene

Variants for RNU6-494P Gene

Additional Variant Information for RNU6-494P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-494P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-494P Gene

Disorders for RNU6-494P Gene

No disorders were found for RNU6-494P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-494P Gene

Publications for RNU6-494P Gene

No publications were found for RNU6-494P Gene.

No data available for Mastermind for RNU6-494P Gene

Products for RNU6-494P Gene

Sources for RNU6-494P Gene