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Aliases for RNU6-487P Gene

Subcategory (RNA class) for RNU6-487P Gene

snRNA

Aliases for RNU6-487P Gene

  • RNA, U6 Small Nuclear 487, Pseudogene 2 3 5

External Ids for RNU6-487P Gene

ORGUL Members for RNU6-487P Gene

Previous GeneCards Identifiers for RNU6-487P Gene

  • GC01M203290
  • GC00U935104

Summaries for RNU6-487P Gene

GeneCards Summary for RNU6-487P Gene

RNU6-487P (RNA, U6 Small Nuclear 487, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-487P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-487P Gene

Genomics for RNU6-487P Gene

GeneHancer (GH) Regulatory Elements for RNU6-487P Gene

Promoters and enhancers for RNU6-487P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I203284 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.8 +30.5 30502 8.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B YBX1 IRF4 ZNF766 E2F8 LINC01353 BTG2 RNU6-487P KDM5B FMOD LOC100131747 RABIF ADIPOR1 KLHL12 LINC01136
GH01I203272 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.5 +44.7 44721 3.6 HDGF ARNT SIN3A FEZF1 ZNF2 ZBTB7B IRF4 E2F8 ZNF207 ZNF143 CHIT1 BTG2 LINC01136 RNU6-487P LOC100131747 FMOD OPTC PRELP LINC01353 GC01P203263
GH01I203276 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 13 +38.7 38711 7.9 HDGF PKNOX1 FOXA2 RB1 ZNF48 ZNF335 ZNF121 GLIS2 ATF7 IKZF2 BTG2 SNRPE LINC01136 RNU6-487P LOC100506672 KDM5B ZBED6 ZC3H11A LOC100131747 FMOD
GH01I203268 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.6 +50.0 49996 1.1 HDGF HDAC1 PKNOX1 ATF1 RB1 ARNT SIN3A ZNF2 RAD21 RFX5 BTG2 LINC01136 RNU6-487P OPTC FMOD LOC100131747 PRELP CHIT1 GC01P203263
GH01I203266 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.6 +51.6 51568 1.4 HDGF HDAC1 RB1 ZNF2 KLF5 ZNF48 RAD21 RFX5 ZNF335 ZNF766 BTG2 LINC01136 RNU6-487P PPFIA4 FMOD LOC100131747 ADORA1 ENSG00000224671 OPTC CHI3L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-487P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-487P Gene

Genomic Locations for RNU6-487P Gene
chr1:203,318,996-203,319,099
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-487P Gene

Genes around RNU6-487P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-487P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-487P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-487P Gene

Proteins for RNU6-487P Gene

Post-translational modifications for RNU6-487P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-487P Gene

Domains & Families for RNU6-487P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-487P Gene

Function for RNU6-487P Gene

Phenotypes From GWAS Catalog for RNU6-487P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-487P Gene

Localization for RNU6-487P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-487P Gene

Pathways & Interactions for RNU6-487P Gene

SuperPathways for RNU6-487P Gene

No Data Available

Interacting Proteins for RNU6-487P Gene

Gene Ontology (GO) - Biological Process for RNU6-487P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-487P Gene

Drugs & Compounds for RNU6-487P Gene

No Compound Related Data Available

Transcripts for RNU6-487P Gene

mRNA/cDNA for RNU6-487P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-487P Gene

No ASD Table

Relevant External Links for RNU6-487P Gene

GeneLoc Exon Structure for
RNU6-487P
ECgene alternative splicing isoforms for
RNU6-487P

Expression for RNU6-487P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-487P Gene

genes like me logo Genes that share expression patterns with RNU6-487P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-487P Gene

Orthologs for RNU6-487P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-487P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22886 34
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves U6 34
  • 92 (a)
OneToOne
Species where no ortholog for RNU6-487P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-487P Gene

ENSEMBL:
Gene Tree for RNU6-487P (if available)
TreeFam:
Gene Tree for RNU6-487P (if available)

Paralogs for RNU6-487P Gene

No data available for Paralogs for RNU6-487P Gene

Variants for RNU6-487P Gene

Additional Variant Information for RNU6-487P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-487P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-487P Gene

Disorders for RNU6-487P Gene

No disorders were found for RNU6-487P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-487P Gene

Publications for RNU6-487P Gene

No publications were found for RNU6-487P Gene.

Products for RNU6-487P Gene

Sources for RNU6-487P Gene

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