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Aliases for RNU6-456P Gene

Subcategory (RNA class) for RNU6-456P Gene


Aliases for RNU6-456P Gene

  • RNA, U6 Small Nuclear 456, Pseudogene 2 3 5

External Ids for RNU6-456P Gene

ORGUL Members for RNU6-456P Gene

Previous GeneCards Identifiers for RNU6-456P Gene

  • GC05M133837
  • GC00U934590

Summaries for RNU6-456P Gene

GeneCards Summary for RNU6-456P Gene

RNU6-456P (RNA, U6 Small Nuclear 456, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-456P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

View fRNAdb secondary structures for RNU6-456P

Additional gene information for RNU6-456P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-456P Gene

Genomics for RNU6-456P Gene

GeneHancer (GH) Regulatory Elements for RNU6-456P Gene

Promoters and enhancers for RNU6-456P Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I134501 Enhancer 0.2 dbSUPER 550.8 -1.4 -1433 0.7 RNU6-456P LINC01843
GH05I134521 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12 -25.2 -25240 7.3 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 JADE2 RNU6-456P RPS10P11 CDKN2AIPNL ENSG00000248559 LINC01843 ENSG00000280420 GC05M134520
GH05I134410 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 11.2 +85.5 85493 8.5 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 NFYC ZNF610 RCOR2 NBN WT1 CDKN2AIPNL DDX46 RNU6-456P JADE2 CATSPER3 CDKL3 C5orf66 C5orf24 SKP1 RPS10P11
GH05I134435 Enhancer 1.6 VISTA Ensembl ENCODE dbSUPER 11.1 +62.7 62664 5.1 HDGF FOXA2 PKNOX1 SMAD1 ATF1 ARNT ARID4B SIN3A ZNF48 YY1 ENSG00000250994 CDKN2AIPNL JADE2 ENSG00000248559 RNU6-456P SKP1 LOC102546229 GC05P134014
GH05I134529 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.5 -30.3 -30313 1.6 SCRT1 ZNF121 ZNF449 SCRT2 RPS10P11 CDKN2AIPNL RNU6-456P ENSG00000248559 GC05M134520 JADE2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-456P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-456P Gene

Genomic Locations for RNU6-456P Gene
107 bases
Minus strand

Genomic View for RNU6-456P Gene

Genes around RNU6-456P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-456P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-456P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-456P Gene

ORGUL Member Location for RNU6-456P Gene

ORGUL Member Location for RNU6-456P gene

Proteins for RNU6-456P Gene

Post-translational modifications for RNU6-456P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-456P Gene

Domains & Families for RNU6-456P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-456P Gene

Function for RNU6-456P Gene

Phenotypes From GWAS Catalog for RNU6-456P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-456P Gene

Localization for RNU6-456P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-456P Gene

Pathways & Interactions for RNU6-456P Gene

SuperPathways for RNU6-456P Gene

No Data Available

Interacting Proteins for RNU6-456P Gene

Gene Ontology (GO) - Biological Process for RNU6-456P Gene


No data available for Pathways by source and SIGNOR curated interactions for RNU6-456P Gene

Drugs & Compounds for RNU6-456P Gene

No Compound Related Data Available

Transcripts for RNU6-456P Gene

fRNAdb Secondary structures for RNU6-456P Gene

  • RF00026;U6;AADB02009496.1/117146-117252

mRNA/cDNA for RNU6-456P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-456P Gene

No ASD Table

Relevant External Links for RNU6-456P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RNU6-456P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-456P Gene

genes like me logo Genes that share expression patterns with RNU6-456P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-456P Gene

Orthologs for RNU6-456P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-456P Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia U6 34
  • 100 (a)
(Canis familiaris)
Mammalia U6 34
  • 86 (a)
(Monodelphis domestica)
Mammalia U6 34
  • 81 (a)
(Bos Taurus)
Mammalia U6 34
  • 76 (a)
(Anolis carolinensis)
Reptilia U6 34
  • 75 (a)
Species where no ortholog for RNU6-456P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-456P Gene

Gene Tree for RNU6-456P (if available)
Gene Tree for RNU6-456P (if available)

Paralogs for RNU6-456P Gene

No data available for Paralogs for RNU6-456P Gene

Variants for RNU6-456P Gene

Additional Variant Information for RNU6-456P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-456P Gene

Disorders for RNU6-456P Gene

No disorders were found for RNU6-456P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-456P Gene

Publications for RNU6-456P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-456P Gene

Sources for RNU6-456P Gene

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