Aliases for RNU6-440P Gene

Aliases for RNU6-440P Gene

  • RNA, U6 Small Nuclear 440, Pseudogene 2 3 5

External Ids for RNU6-440P Gene

Previous GeneCards Identifiers for RNU6-440P Gene

  • GC02P202795
  • GC00U934861

Summaries for RNU6-440P Gene

GeneCards Summary for RNU6-440P Gene

RNU6-440P (RNA, U6 Small Nuclear 440, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-440P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-440P Gene

Genomics for RNU6-440P Gene

GeneHancer (GH) Regulatory Elements for RNU6-440P Gene

Promoters and enhancers for RNU6-440P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J201926 Enhancer 0.3 Ensembl 500.7 -1.0 -1039 0.4 ZIC2 GLIS1 RF00026-610 RNU6-440P HSALNG0021579
GH02J201928 Enhancer 0.2 Ensembl 500.7 +1.8 1762 0.8 RF00026-610 RNU6-440P HSALNG0021583
GH02J202030 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 +107.8 107755 9.8 CTCF SIN3A SP1 PHF8 TEAD4 ZFX ZIC2 POLR2A ZBTB10 CLOCK FZD7 ENSG00000273209 KIAA2012 CDK15 KIAA2012-AS1 RNU6-440P FAM117B TMEM237 lnc-SUMO1-3
GH02J201805 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas 10.3 -120.1 -120060 2.8 ZIC2 TRIM28 ZNF341 OSR2 WT1 ZBTB17 REST NR3C1 POLR2A FOSL1 ENSG00000202137 CDK15 ALS2 FZD7 RNU6-440P KIAA2012-AS1 SNORD70B NOP58 SNORD70
GH02J201890 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 10.9 -36.3 -36338 1.8 JUND FOS EP300 NFIC ZNF184 FOSL2 CEBPB JUN NFE2 KLF8 FZD7 RNU6-440P HSALNG0021579 CDK15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-440P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-440P Gene

Genomic Locations for RNU6-440P Gene
chr2:201,927,439-201,927,543
(GRCh38/hg38)
Size:
105 bases
Orientation:
Plus strand

Genomic View for RNU6-440P Gene

Genes around RNU6-440P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-440P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-440P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-440P Gene

Proteins for RNU6-440P Gene

Post-translational modifications for RNU6-440P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-440P Gene

Domains & Families for RNU6-440P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-440P Gene

Function for RNU6-440P Gene

Phenotypes From GWAS Catalog for RNU6-440P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-440P Gene

Localization for RNU6-440P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-440P Gene

Pathways & Interactions for RNU6-440P Gene

PathCards logo

SuperPathways for RNU6-440P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-440P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-440P Gene

Drugs & Compounds for RNU6-440P Gene

No Compound Related Data Available

Transcripts for RNU6-440P Gene

mRNA/cDNA for RNU6-440P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-440P Gene

No ASD Table

Relevant External Links for RNU6-440P Gene

GeneLoc Exon Structure for
RNU6-440P

Expression for RNU6-440P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-440P Gene

genes like me logo Genes that share expression patterns with RNU6-440P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-440P Gene

Orthologs for RNU6-440P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-440P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22523 31
  • 68 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 58 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 31
  • 55 (a)
OneToMany
Species where no ortholog for RNU6-440P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-440P Gene

ENSEMBL:
Gene Tree for RNU6-440P (if available)
TreeFam:
Gene Tree for RNU6-440P (if available)

Paralogs for RNU6-440P Gene

No data available for Paralogs for RNU6-440P Gene

Variants for RNU6-440P Gene

Additional Variant Information for RNU6-440P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-440P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-440P Gene

Disorders for RNU6-440P Gene

No disorders were found for RNU6-440P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-440P Gene

Publications for RNU6-440P Gene

No publications were found for RNU6-440P Gene.

No data available for Mastermind for RNU6-440P Gene

Products for RNU6-440P Gene

Sources for RNU6-440P Gene