Aliases for RNU6-403P Gene

Aliases for RNU6-403P Gene

  • RNA, U6 Small Nuclear 403, Pseudogene 2 3 5

External Ids for RNU6-403P Gene

Previous GeneCards Identifiers for RNU6-403P Gene

  • GC01M222012
  • GC00U936018

Summaries for RNU6-403P Gene

GeneCards Summary for RNU6-403P Gene

RNU6-403P (RNA, U6 Small Nuclear 403, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-403P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-403P Gene

Genomics for RNU6-403P Gene

GeneHancer (GH) Regulatory Elements for RNU6-403P Gene

Promoters and enhancers for RNU6-403P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J221837 Promoter/Enhancer 1 FANTOM5 Ensembl ENCODE 750.6 -0.6 -568 0.8 ETV6 ZNF687 IKZF1 RNF2 IKZF2 RUNX3 RNU6-403P RF00026-103 DUSP10 LINC01655
GH01J221721 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +112.3 112339 6.5 SMARCE1 ZNF133 L3MBTL2 TEAD4 ZKSCAN8 ZFX SP1 CBFA2T2 BACH1 MLLT1 CICP13 ENSG00000272750 TAF1A RNU6-403P MIA3 DUSP10 HHIPL2 HLX-AS1 LOC105372945
GH01J221960 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -125.4 -125367 6 SMARCE1 USF2 NR2F1 NR2F6 MAX RAD21 ZNF652 ZKSCAN8 ZNF148 ELF3 CICP13 ENSG00000272750 TAF1A RNU6-403P AIDA DISP1 MIA3 LINC02257 LINC02474 ENSG00000229399
GH01J221986 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -154.5 -154528 11.3 SMARCE1 ETV6 RELA HLF DACH1 TEAD4 CTCF CBFA2T2 BACH1 MLLT1 DUSP10 LINC02257 LINC02474 RNU6-403P LINC01705 ENSG00000229399 RF01061-023
GH01J221886 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.9 -50.1 -50064 3 SMARCE1 POLR2A USF2 ZNF217 HLF RAD21 MNT BCL6B ZBTB33 SP1 RNU6-403P LINC02257 LINC01655 piR-32559-032
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-403P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-403P Gene

Genomic Locations for RNU6-403P Gene
chr1:221,837,334-221,837,437
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-403P Gene

Genes around RNU6-403P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-403P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-403P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-403P Gene

Proteins for RNU6-403P Gene

Post-translational modifications for RNU6-403P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-403P Gene

Domains & Families for RNU6-403P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-403P Gene

Function for RNU6-403P Gene

Phenotypes From GWAS Catalog for RNU6-403P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-403P Gene

Localization for RNU6-403P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-403P Gene

Pathways & Interactions for RNU6-403P Gene

PathCards logo

SuperPathways for RNU6-403P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-403P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-403P Gene

Drugs & Compounds for RNU6-403P Gene

No Compound Related Data Available

Transcripts for RNU6-403P Gene

mRNA/cDNA for RNU6-403P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-403P Gene

No ASD Table

Relevant External Links for RNU6-403P Gene

GeneLoc Exon Structure for
RNU6-403P
ECgene alternative splicing isoforms for
RNU6-403P

Expression for RNU6-403P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-403P Gene

genes like me logo Genes that share expression patterns with RNU6-403P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-403P Gene

Orthologs for RNU6-403P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-403P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 33
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22113 33
  • 86 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 33
  • 80 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 33
  • 77 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 33
  • 71 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6 33
  • 74 (a)
OneToMany
Species where no ortholog for RNU6-403P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-403P Gene

ENSEMBL:
Gene Tree for RNU6-403P (if available)
TreeFam:
Gene Tree for RNU6-403P (if available)

Paralogs for RNU6-403P Gene

No data available for Paralogs for RNU6-403P Gene

Variants for RNU6-403P Gene

Additional Variant Information for RNU6-403P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-403P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-403P Gene

Disorders for RNU6-403P Gene

No disorders were found for RNU6-403P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-403P Gene

Publications for RNU6-403P Gene

No publications were found for RNU6-403P Gene.

Products for RNU6-403P Gene

Sources for RNU6-403P Gene