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Aliases for RNU6-393P Gene

Subcategory (RNA class) for RNU6-393P Gene

snRNA

Aliases for RNU6-393P Gene

  • RNA, U6 Small Nuclear 393, Pseudogene 2 3 5

External Ids for RNU6-393P Gene

ORGUL Members for RNU6-393P Gene

Previous GeneCards Identifiers for RNU6-393P Gene

  • GC07M098394
  • GC00U934727

Summaries for RNU6-393P Gene

GeneCards Summary for RNU6-393P Gene

RNU6-393P (RNA, U6 Small Nuclear 393, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-393P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-393P Gene

Genomics for RNU6-393P Gene

GeneHancer (GH) Regulatory Elements for RNU6-393P Gene

Promoters and enhancers for RNU6-393P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I098795 Enhancer 0.8 ENCODE 550.8 -1.6 -1593 1.9 PKNOX1 CLOCK NFIB NEUROD1 BMI1 BATF ZBTB7B IRF4 ATF7 ETV6 GC07M098795 RNU6-393P PDAP1 TMEM130
GH07I098619 Enhancer 1 Ensembl ENCODE 11.6 +174.8 174765 0.8 PKNOX1 FOXA2 SIN3A RAD21 YY1 ATF7 EGR2 RXRA CEBPB ELF1 RNU6-393P NPTX2 LOC105375419
GH07I098801 Enhancer 1.1 Ensembl ENCODE 0.4 -7.5 -7485 1.4 PKNOX1 SMAD1 SIN3A IRF4 GLIS2 ATF7 FOS RUNX3 JUNB GLIS1 ZSCAN25 ZNF655 ZNF394 LOC101927550 LOC100419643 BAIAP2L1 PTCD1 RPS3AP26 TRRAP SMURF1
GH07I098869 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 0.2 -75.4 -75377 0.8 MXI1 KLF1 SUZ12 KLF17 EBF1 ZIC2 ZNF335 ZFHX2 GLIS2 POLR2A TMEM130 GC07M098795 RNU6-393P
GH07I098838 Enhancer 0.9 ENCODE 0.3 -42.7 -42729 0.2 PKNOX1 KLF17 MZF1 FEZF1 ZNF2 ZNF335 ZNF121 GLIS2 ZNF213 ZNF366 ZNF789 TRRAP TMEM225B TMEM130 GC07M098795 RNU6-393P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-393P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-393P Gene

Genomic Locations for RNU6-393P Gene
chr7:98,794,718-98,794,824
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-393P Gene

Genes around RNU6-393P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-393P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-393P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-393P Gene

Proteins for RNU6-393P Gene

Post-translational modifications for RNU6-393P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-393P Gene

Domains & Families for RNU6-393P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-393P Gene

Function for RNU6-393P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-393P Gene

Localization for RNU6-393P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-393P Gene

Pathways & Interactions for RNU6-393P Gene

SuperPathways for RNU6-393P Gene

No Data Available

Interacting Proteins for RNU6-393P Gene

Gene Ontology (GO) - Biological Process for RNU6-393P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-393P Gene

Drugs & Compounds for RNU6-393P Gene

No Compound Related Data Available

Transcripts for RNU6-393P Gene

mRNA/cDNA for RNU6-393P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-393P Gene

No ASD Table

Relevant External Links for RNU6-393P Gene

GeneLoc Exon Structure for
RNU6-393P
ECgene alternative splicing isoforms for
RNU6-393P

Expression for RNU6-393P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-393P Gene

Orthologs for RNU6-393P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-393P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 94 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 92 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25987 34
  • 92 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 90 (a)
ManyToMany
Species where no ortholog for RNU6-393P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-393P Gene

ENSEMBL:
Gene Tree for RNU6-393P (if available)
TreeFam:
Gene Tree for RNU6-393P (if available)

Paralogs for RNU6-393P Gene

No data available for Paralogs for RNU6-393P Gene

Variants for RNU6-393P Gene

Additional Variant Information for RNU6-393P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-393P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-393P Gene

Disorders for RNU6-393P Gene

No disorders were found for RNU6-393P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-393P Gene

Publications for RNU6-393P Gene

No publications were found for RNU6-393P Gene.

Products for RNU6-393P Gene

Sources for RNU6-393P Gene

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