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Aliases for RNU6-339P Gene

Subcategory (RNA class) for RNU6-339P Gene

snRNA

Aliases for RNU6-339P Gene

  • RNA, U6 Small Nuclear 339, Pseudogene 2 3 5

External Ids for RNU6-339P Gene

ORGUL Members for RNU6-339P Gene

Previous GeneCards Identifiers for RNU6-339P Gene

  • GC15M085486
  • GC00U934923

Summaries for RNU6-339P Gene

GeneCards Summary for RNU6-339P Gene

RNU6-339P (RNA, U6 Small Nuclear 339, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-339P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-339P Gene

Genomics for RNU6-339P Gene

GeneHancer (GH) Regulatory Elements for RNU6-339P Gene

Promoters and enhancers for RNU6-339P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I084926 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +9.6 9581 4 HDGF PKNOX1 CLOCK FOXA2 ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B YY1 SCAND2P WDR73 UBE2Q2P1 GOLGA6L5P GOLGA6L4 RN7SL417P SEC11A GC15M084941 RNU6-339P SLC28A1
GH15I084910 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.2 25176 5.3 HDGF FOXA2 PKNOX1 CLOCK MLX ARNT ARID4B NEUROD1 SIN3A DMAP1 GOLGA2P7 CSPG4P11 LOC103171574 LINC00933 GOLGA6L3 SLC28A1 GC15M084891 RNU6-339P GC15M084941
GH15I084907 Enhancer 0.9 ENCODE dbSUPER 0.3 +29.8 29781 1.6 HDAC1 NCOA3 BCOR TFAP4 SAP130 ARID4B CHD4 ZMYM3 ZNF384 ZNF48 GOLGA6L3 ENSG00000259683 GOLGA6L4 GC15M084891 SLC28A1 GC15M084941 RNU6-339P
GH15I084923 Enhancer 0.6 ENCODE 0.4 +13.8 13775 1.8 BCOR FOXA2 CEBPB ZMYM3 REST CEBPG YY1 RCOR2 HNF4A KDM1A GOLGA6L4 GC15M084941 RNU6-339P GC15M084891 SLC28A1
GH15I084894 Enhancer 0.7 ENCODE 0.3 +43.4 43405 1.1 KLF1 NEUROD1 E4F1 CTBP1 ELK1 FOS FOSL2 ZBTB20 SMARCE1 MAZ GOLGA6L5P GOLGA6L3 NMB ENSG00000259683 GC15M084891 SLC28A1 GC15M084941 RNU6-339P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-339P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-339P Gene

Genomic Locations for RNU6-339P Gene
chr15:84,938,416-84,938,522
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-339P Gene

Genes around RNU6-339P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-339P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-339P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-339P Gene

Proteins for RNU6-339P Gene

Post-translational modifications for RNU6-339P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-339P Gene

Domains & Families for RNU6-339P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-339P Gene

Function for RNU6-339P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-339P Gene

Localization for RNU6-339P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-339P Gene

Pathways & Interactions for RNU6-339P Gene

SuperPathways for RNU6-339P Gene

No Data Available

Interacting Proteins for RNU6-339P Gene

Gene Ontology (GO) - Biological Process for RNU6-339P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-339P Gene

Drugs & Compounds for RNU6-339P Gene

No Compound Related Data Available

Transcripts for RNU6-339P Gene

mRNA/cDNA for RNU6-339P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-339P Gene

No ASD Table

Relevant External Links for RNU6-339P Gene

GeneLoc Exon Structure for
RNU6-339P
ECgene alternative splicing isoforms for
RNU6-339P

Expression for RNU6-339P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-339P Gene

genes like me logo Genes that share expression patterns with RNU6-339P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-339P Gene

Orthologs for RNU6-339P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-339P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 84 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 78 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 75 (a)
ManyToMany
Species where no ortholog for RNU6-339P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-339P Gene

ENSEMBL:
Gene Tree for RNU6-339P (if available)
TreeFam:
Gene Tree for RNU6-339P (if available)

Paralogs for RNU6-339P Gene

No data available for Paralogs for RNU6-339P Gene

Variants for RNU6-339P Gene

Additional Variant Information for RNU6-339P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-339P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-339P Gene

Disorders for RNU6-339P Gene

No disorders were found for RNU6-339P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-339P Gene

Publications for RNU6-339P Gene

No publications were found for RNU6-339P Gene.

Products for RNU6-339P Gene

Sources for RNU6-339P Gene

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