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Aliases for RNU6-333P Gene

Subcategory (RNA class) for RNU6-333P Gene

snRNA

Aliases for RNU6-333P Gene

  • RNA, U6 Small Nuclear 333, Pseudogene 2 3 5

External Ids for RNU6-333P Gene

ORGUL Members for RNU6-333P Gene

Previous GeneCards Identifiers for RNU6-333P Gene

  • GC12M053534
  • GC00U934601

Summaries for RNU6-333P Gene

GeneCards Summary for RNU6-333P Gene

RNU6-333P (RNA, U6 Small Nuclear 333, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-333P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-333P Gene

Genomics for RNU6-333P Gene

GeneHancer (GH) Regulatory Elements for RNU6-333P Gene

Promoters and enhancers for RNU6-333P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053078 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.7 +58.9 58901 3.5 SP1 ZFX NKRF POLR2A MLLT1 GTF2F1 ZNF687 FOS AHR MAFK SPRYD3 ZNF740 SOAT2 TARBP2 EIF4B ENSG00000270175 NPFF RNU6-333P HOXC6 CSAD
GH12J053101 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.4 +35.0 34958 3.4 ELF3 POLR2A CEBPG ZNF687 AHR TFE3 SP1 PPARG HNF1A SP5 SOAT2 RNU6-333P CSAD ZNF740 KRT76 IGFBP6 VTI1BP3
GH12J053060 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.8 +71.0 71027 14.9 CC2D1A CTCF ELF3 CEBPG NFIB TFE3 ZBTB7A SP7 POLR2A SP1 AAAS PCBP2 ZNF740 ATF7 SP1 PFDN5 LOC100652999 EIF4B CALCOCO1 ENSG00000257337
GH12J053190 Enhancer 1 Ensembl ENCODE 10.4 -51.5 -51472 1.3 CTCF ZNF148 ELF1 RAD21 ZBTB33 POLR2A BACH1 ZIC2 ZNF143 REST ESPL1 SOAT2 MFSD5 RNU6-333P C12orf10 CSAD ZNF740 ITGB7
GH12J053175 Enhancer 0.5 Ensembl 11.4 -34.9 -34850 0.2 PRDM1 ZNF600 PRDM10 ZIC2 ZNF366 KLF17 FOS ITGB7 RNU6-333P ESPL1 SOAT2 C12orf10 PFDN5 IGFBP6 MFSD5 ZNF740 CSAD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-333P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-333P Gene

Genomic Locations for RNU6-333P Gene
chr12:53,138,545-53,138,651
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-333P Gene

Genes around RNU6-333P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-333P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-333P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-333P Gene

Proteins for RNU6-333P Gene

Post-translational modifications for RNU6-333P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-333P Gene

Domains & Families for RNU6-333P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-333P Gene

Function for RNU6-333P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-333P Gene

Localization for RNU6-333P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-333P Gene

Pathways & Interactions for RNU6-333P Gene

PathCards logo

SuperPathways for RNU6-333P Gene

No Data Available

Interacting Proteins for RNU6-333P Gene

Gene Ontology (GO) - Biological Process for RNU6-333P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-333P Gene

Drugs & Compounds for RNU6-333P Gene

No Compound Related Data Available

Transcripts for RNU6-333P Gene

mRNA/cDNA for RNU6-333P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-333P Gene

No ASD Table

Relevant External Links for RNU6-333P Gene

GeneLoc Exon Structure for
RNU6-333P
ECgene alternative splicing isoforms for
RNU6-333P

Expression for RNU6-333P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-333P Gene

Orthologs for RNU6-333P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-333P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25937 35
  • 89 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 35
  • 87 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 35
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 84 (a)
ManyToMany
Species where no ortholog for RNU6-333P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-333P Gene

ENSEMBL:
Gene Tree for RNU6-333P (if available)
TreeFam:
Gene Tree for RNU6-333P (if available)

Paralogs for RNU6-333P Gene

No data available for Paralogs for RNU6-333P Gene

Variants for RNU6-333P Gene

Additional Variant Information for RNU6-333P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-333P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-333P Gene

Disorders for RNU6-333P Gene

No disorders were found for RNU6-333P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-333P Gene

Publications for RNU6-333P Gene

No publications were found for RNU6-333P Gene.

No data available for External Links for RNU6-333P Gene

Products for RNU6-333P Gene

Sources for RNU6-333P Gene

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