Aliases for RNU6-317P Gene
Subcategory (RNA class) for RNU6-317P Gene
snRNA
External Ids for RNU6-317P Gene
- HGNC: 47280
- Entrez Gene: 106479708
- Ensembl: ENSG00000206758
Previous GeneCards Identifiers for RNU6-317P Gene
- GC19M049299
- GC00U935717
Summaries for RNU6-317P Gene
GeneCards Summary for RNU6-317P Gene
RNU6-317P (RNA, U6 Small Nuclear 317, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.
Additional gene information for RNU6-317P Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-317P Gene
Genomics for RNU6-317P Gene
GeneHancer (GH) Regulatory Elements for RNU6-317P Gene
Promoters and enhancers for RNU6-317P Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH19J048794 | Enhancer | 1.3 | ENCODE dbSUPER | 0.7 | -2.6 | -2576 | 2.7 | SP1 ELF3 ZFX CC2D1A CTCF ZKSCAN8 SIX5 ZNF148 ZNF121 CEBPG | RASIP1 NUCB1-AS1 PRR12 SNRNP70 IZUMO1 TULP2 MAMSTR FUT2 NUCB1 CGB7 | |
| GH19J048788 | Enhancer | 1.1 | Ensembl ENCODE | 0.4 | +5.0 | 5021 | 1.3 | CC2D1A CTCF ZSCAN21 SP7 PRDM1 RAD21 RXRA ARID2 GATAD2A ATF1 | GC19P048785 RNU6-317P GC19M048794 | |
| GH19J048798 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.4 | -6.0 | -5964 | 1.2 | ZSCAN21 ZIC2 ATF7 ZNF585B ZBTB48 ATF2 ZNF366 EBF1 GLIS1 | HSD17B14 PRR12 NUCB1 TULP2 IZUMO1 RASIP1 PRMT1 NUCB1-AS1 MAMSTR FUT2 | |
| GH19J048797 | Enhancer | 0.4 | dbSUPER | 0.4 | -5.0 | -5013 | 0.6 | PKNOX1 ZNF16 | GRWD1 IZUMO1 RASIP1 PRR12 NUCB1 NUCB1-AS1 TULP2 CYTH2 RUVBL2 HSD17B14 | |
| GH19J048790 | Enhancer | 0.2 | Ensembl | 0.7 | +4.2 | 4157 | 0.2 | GC19M048794 RNU6-317P GC19P048785 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RNU6-317P on UCSC Golden Path with GeneCards custom track
Genomic Locations for RNU6-317P Gene
Genomic Locations for RNU6-317P Gene
- chr19:48,793,152-48,793,258
- (GRCh38/hg38)
- Size:
- 107 bases
- Orientation:
- Minus strand
Genomic View for RNU6-317P Gene
Genes around RNU6-317P on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.33 by HGNC
- 19q13.33 by Entrez Gene
- 19q13.33 by Ensembl
RNU6-317P Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RNU6-317P Gene
Proteins for RNU6-317P Gene
Post-translational modifications for RNU6-317P Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNU6-317P
- Origene Custom Protein Services for RNU6-317P
No data available for DME Specific Peptides for RNU6-317P Gene
Domains & Families for RNU6-317P Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-317P Gene
Function for RNU6-317P Gene
Phenotypes From GWAS Catalog for RNU6-317P Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for RNU6-317P
-
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-317P Gene
Localization for RNU6-317P Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-317P Gene
Transcripts for RNU6-317P Gene
mRNA/cDNA for RNU6-317P Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000384031 107 bps (ENST00000384031.1)
CRISPR Products
- Browse CRISPR knockouts for RNU6-317P
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for RNU6-317P Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-317P Gene
Orthologs for RNU6-317P Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | U6 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | U6 35 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | U6 35 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | U6 35 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Gm23247 35 |
|
ManyToMany |
- Species where no ortholog for RNU6-317P was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for RNU6-317P Gene
No data available for Paralogs for RNU6-317P Gene
Variants for RNU6-317P Gene
Additional Variant Information for RNU6-317P Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RNU6-317P
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-317P Gene
Disorders for RNU6-317P Gene
No disorders were found for RNU6-317P Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-317P Gene
Publications for RNU6-317P Gene
No publications were found for RNU6-317P Gene.
No data available for External Links for RNU6-317P Gene
Products for RNU6-317P Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RNU6-317P
- Origene Custom Protein Services for RNU6-317P
- Browse OriGene Inhibitory RNA Products For RNU6-317P
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RNU6-317P
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RNU6-317P
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for RNU6-317P
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RNU6-317P
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RNU6-317P
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RNU6-317P
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RNU6-317P
Sources for RNU6-317P Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind