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RNU6-317P Gene(Pseudogene)

RNA, U6 Small Nuclear 317, Pseudogene

GCID:
GC19M048793
GIFtS:
9
Genes Participants
UDN Logo

Aliases for RNU6-317P Gene

Subcategory (RNA class) for RNU6-317P Gene

snRNA

Aliases for RNU6-317P Gene

  • RNA, U6 Small Nuclear 317, Pseudogene 2 3 5

External Ids for RNU6-317P Gene

ORGUL Members for RNU6-317P Gene

Previous GeneCards Identifiers for RNU6-317P Gene

  • GC19M049299
  • GC00U935717

Summaries for RNU6-317P Gene

GeneCards Summary for RNU6-317P Gene

RNU6-317P (RNA, U6 Small Nuclear 317, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-317P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-317P Gene

Genomics for RNU6-317P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RNU6-317P Gene

Promoters and enhancers for RNU6-317P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19I048794 Enhancer 1.5 Ensembl ENCODE dbSUPER 0.8 -2.6 -2576 2.7 HDGF CLOCK ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 POLR2B ZNF766 RASIP1 NUCB1-AS1 PRR12 SNRNP70 IZUMO1 TULP2 MAMSTR FUT2 NUCB1 CGB7
GH19I048789 Enhancer 0.9 ENCODE 0.8 +4.7 4719 0.7 ATF1 RB1 ZSCAN4 ARID4B ZNF2 ZSCAN9 RAD21 RFX5 ZEB1 ZNF335 GC19M048794 GC19P048785 RNU6-317P
GH19I048798 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -5.9 -5913 1.1 EBF1 ZIC2 ATF2 ZSCAN21 ZNF366 ZNF585B ZBTB48 GLIS1 ATF7 HSD17B14 PRR12 TULP2 NUCB1 IZUMO1 RASIP1 PRMT1 NUCB1-AS1 MAMSTR FUT2
GH19I048788 Enhancer 0.8 ENCODE 0.4 +5.2 5159 0.2 ATF1 RB1 ARID4B ZNF2 ZSCAN9 RAD21 RFX5 ZNF335 ARID2 ZNF143 GC19P048785 GC19M048794 RNU6-317P
GH19I048797 Enhancer 0.4 dbSUPER 0.4 -5.0 -5013 0.6 PKNOX1 ZNF16 GRWD1 IZUMO1 RASIP1 PRR12 NUCB1 NUCB1-AS1 TULP2 CYTH2 RUVBL2 HSD17B14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-317P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-317P Gene

Genomic Locations for RNU6-317P Gene
chr19:48,793,152-48,793,258
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-317P Gene

Genes around RNU6-317P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-317P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-317P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-317P Gene

Proteins for RNU6-317P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-317P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-317P Gene

Domains & Families for RNU6-317P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-317P Gene

Function for RNU6-317P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU6-317P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-317P Gene

Localization for RNU6-317P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-317P Gene

Pathways & Interactions for RNU6-317P Gene

SuperPathways for RNU6-317P Gene

PathCards logo More details on SuperPathways for RNU6-317P
No Data Available

Interacting Proteins for RNU6-317P Gene

Gene Ontology (GO) - Biological Process for RNU6-317P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-317P Gene

Drugs & Compounds for RNU6-317P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-317P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU6-317P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-317P Gene

No ASD Table

Relevant External Links for RNU6-317P Gene

GeneLoc Exon Structure for
RNU6-317P
ECgene alternative splicing isoforms for
RNU6-317P

Expression for RNU6-317P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-317P Gene

mRNA expression in normal human tissues for RNU6-317P Gene
mRNA expression by GTEx for RNU6-317P Gene
genes like me logo Genes that share expression patterns with RNU6-317P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-317P Gene

Orthologs for RNU6-317P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-317P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia U6 34
  • 99 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia U6 34
  • 93 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia U6 34
  • 92 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia U6 34
  • 90 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm23247 34
  • 88 (a)
 ManyToMany
Species where no ortholog for RNU6-317P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-317P Gene

ENSEMBL:
Gene Tree for RNU6-317P (if available)
TreeFam:
Gene Tree for RNU6-317P (if available)

Paralogs for RNU6-317P Gene

No data available for Paralogs for RNU6-317P Gene

Variants for RNU6-317P Gene

Additional Variant Information for RNU6-317P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-317P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-317P Gene

Disorders for RNU6-317P Gene

No disorders were found for RNU6-317P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-317P Gene

Publications for RNU6-317P Gene

No publications were found for RNU6-317P Gene.

Products for RNU6-317P Gene

Sources for RNU6-317P Gene

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