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Aliases for RNU6-299P Gene

Aliases for RNU6-299P Gene

  • RNA, U6 Small Nuclear 299, Pseudogene 2 3 5

External Ids for RNU6-299P Gene

Previous GeneCards Identifiers for RNU6-299P Gene

  • GC05P055423
  • GC00U935767

Summaries for RNU6-299P Gene

GeneCards Summary for RNU6-299P Gene

RNU6-299P (RNA, U6 Small Nuclear 299, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-299P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-299P Gene

Genomics for RNU6-299P Gene

GeneHancer (GH) Regulatory Elements for RNU6-299P Gene

Promoters and enhancers for RNU6-299P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I056122 Enhancer 1.3 Ensembl ENCODE 550.8 -1.8 -1760 3.4 MLX FEZF1 DMAP1 SLC30A9 ZNF213 E2F8 SP3 MEF2D SSRP1 ZNF610 LOC101928419 RNU6-299P MTREX MIER3 ENSG00000271828 DHX29 SLC38A9 FLJ31104 ENSG00000238326 LOC105378976
GH05I056125 Enhancer 0.9 Ensembl ENCODE dbSUPER 550.8 +1.9 1906 3.5 SOX13 MXI1 RFX1 POLR2A ZBTB33 BCL6 RNU6-299P ENSG00000238326 LOC101928419 RPL17P22 ANKRD55
GH05I056146 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +22.5 22520 2.4 SMAD1 RB1 EBF1 BMI1 BATF IRF4 RELA ZKSCAN1 ZNF316 ATF7 RNA5SP184 RNU6-299P FLJ31104 IL6ST ENSG00000238326 C1GALT1P2 ANKRD55
GH05I056174 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +50.7 50691 3.1 ATF1 JUN CEBPG RAD21 FOSL1 ZNF335 FOSL2 NFE2 FOS STAT1 ANKRD55 RNU6-299P ENSG00000238326 IL6ST C1GALT1P2 RNA5SP184
GH05I056167 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +43.7 43723 3.7 HDAC1 MEIS2 PKNOX1 ZNF449 SREBF2 JUN CEBPG GATA3 ZNF316 POLR2A ENSG00000238326 RNU6-299P C1GALT1P2 RNA5SP184 ANKRD55
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-299P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-299P Gene

Genomic Locations for RNU6-299P Gene
chr5:56,125,671-56,125,770
(GRCh38/hg38)
Size:
100 bases
Orientation:
Plus strand

Genomic View for RNU6-299P Gene

Genes around RNU6-299P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-299P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-299P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-299P Gene

Proteins for RNU6-299P Gene

Post-translational modifications for RNU6-299P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-299P Gene

Domains & Families for RNU6-299P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-299P Gene

Function for RNU6-299P Gene

Phenotypes From GWAS Catalog for RNU6-299P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-299P Gene

Localization for RNU6-299P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-299P Gene

Pathways & Interactions for RNU6-299P Gene

SuperPathways for RNU6-299P Gene

No Data Available

Interacting Proteins for RNU6-299P Gene

Gene Ontology (GO) - Biological Process for RNU6-299P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-299P Gene

Drugs & Compounds for RNU6-299P Gene

No Compound Related Data Available

Transcripts for RNU6-299P Gene

mRNA/cDNA for RNU6-299P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-299P Gene

No ASD Table

Relevant External Links for RNU6-299P Gene

GeneLoc Exon Structure for
RNU6-299P
ECgene alternative splicing isoforms for
RNU6-299P

Expression for RNU6-299P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-299P Gene

genes like me logo Genes that share expression patterns with RNU6-299P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-299P Gene

Orthologs for RNU6-299P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-299P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 62 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22165 34
  • 60 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 58 (a)
ManyToMany
Species where no ortholog for RNU6-299P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-299P Gene

ENSEMBL:
Gene Tree for RNU6-299P (if available)
TreeFam:
Gene Tree for RNU6-299P (if available)

Paralogs for RNU6-299P Gene

No data available for Paralogs for RNU6-299P Gene

Variants for RNU6-299P Gene

Additional Variant Information for RNU6-299P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-299P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-299P Gene

Disorders for RNU6-299P Gene

No disorders were found for RNU6-299P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-299P Gene

Publications for RNU6-299P Gene

No publications were found for RNU6-299P Gene.

Products for RNU6-299P Gene

Sources for RNU6-299P Gene

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