Aliases for RNU6-28P Gene

Aliases for RNU6-28P Gene

  • RNA, U6 Small Nuclear 28, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 28 2
  • RNU6-28 3

External Ids for RNU6-28P Gene

Previous HGNC Symbols for RNU6-28P Gene

  • RNU6-28

Previous GeneCards Identifiers for RNU6-28P Gene

  • GC22M031878

Summaries for RNU6-28P Gene

GeneCards Summary for RNU6-28P Gene

RNU6-28P (RNA, U6 Small Nuclear 28, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-28P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-28P Gene

Genomics for RNU6-28P Gene

GeneHancer (GH) Regulatory Elements for RNU6-28P Gene

Promoters and enhancers for RNU6-28P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J031479 Enhancer 0.2 Ensembl 500.7 -0.4 -412 0.2 RF00026-677 RNU6-28P SFI1 EIF4ENIF1 RF00017-3804 DRG1
GH22J031517 Enhancer 0.4 Ensembl 11.8 -39.0 -39011 1.4 TAL1 ARID1B SOX6 SFI1 EIF4ENIF1 RNU6-28P ENSG00000240591 DRG1 H2AZP6 lnc-EIF4ENIF1-4 piR-48965-086 RF00017-3804
GH22J031458 Enhancer 0.2 FANTOM5 11.8 +20.6 20550 0 RNU6-28P SFI1 EIF4ENIF1 ENSG00000240591 piR-57133-392 RF00026-677 DRG1 RF00017-3804
GH22J031475 Enhancer 0.8 Ensembl ENCODE 0.7 +3.7 3688 5.2 ZNF384 ARNT NBN ELF1 MAFK REST TBX21 NFATC1 SPI1 ZNF687 SFI1 PIK3IP1 RF00026-677 RNU6-28P EIF4ENIF1 piR-57133-392 RF00017-3804 DRG1
GH22J031456 Enhancer 0.3 Ensembl 0.4 +22.5 22488 0.8 PRDM4 SFI1 ENSG00000240591 piR-57133-392 RF00026-677 RNU6-28P EIF4ENIF1 DRG1 RF00017-3804
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-28P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-28P Gene

Genomic Locations for RNU6-28P Gene
chr22:31,479,383-31,479,489
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand
chr22:31,875,369-31,875,475
(GRCh37/hg19)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-28P Gene

Genes around RNU6-28P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-28P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-28P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-28P Gene

Proteins for RNU6-28P Gene

Post-translational modifications for RNU6-28P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-28P Gene

Domains & Families for RNU6-28P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-28P Gene

Function for RNU6-28P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-28P Gene

Localization for RNU6-28P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-28P Gene

Pathways & Interactions for RNU6-28P Gene

PathCards logo

SuperPathways for RNU6-28P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-28P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-28P Gene

Drugs & Compounds for RNU6-28P Gene

No Compound Related Data Available

Transcripts for RNU6-28P Gene

mRNA/cDNA for RNU6-28P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-28P Gene

No ASD Table

Relevant External Links for RNU6-28P Gene

GeneLoc Exon Structure for
RNU6-28P

Expression for RNU6-28P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-28P Gene

genes like me logo Genes that share expression patterns with RNU6-28P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-28P Gene

Orthologs for RNU6-28P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-28P Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia U6 31
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25512 31
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 31
  • 85 (a)
OneToMany
Species where no ortholog for RNU6-28P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-28P Gene

ENSEMBL:
Gene Tree for RNU6-28P (if available)
TreeFam:
Gene Tree for RNU6-28P (if available)

Paralogs for RNU6-28P Gene

No data available for Paralogs for RNU6-28P Gene

Variants for RNU6-28P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-28P Gene

Variant ID Type Subtype PubMed ID
nsv1060776 CNV gain 25217958
nsv1063634 CNV gain 25217958
nsv1110864 OTHER inversion 24896259
nsv588894 CNV loss 21841781

Additional Variant Information for RNU6-28P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-28P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RNU6-28P Gene

Disorders for RNU6-28P Gene

Additional Disease Information for RNU6-28P

No disorders were found for RNU6-28P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU6-28P Gene

Publications for RNU6-28P Gene

No publications were found for RNU6-28P Gene.

Products for RNU6-28P Gene

Sources for RNU6-28P Gene