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Aliases for RNU6-288P Gene

Subcategory (RNA class) for RNU6-288P Gene

snRNA

Aliases for RNU6-288P Gene

  • RNA, U6 Small Nuclear 288, Pseudogene 2 3 5

External Ids for RNU6-288P Gene

ORGUL Members for RNU6-288P Gene

Previous GeneCards Identifiers for RNU6-288P Gene

  • GC17M061652
  • GC00U935256

Summaries for RNU6-288P Gene

GeneCards Summary for RNU6-288P Gene

RNU6-288P (RNA, U6 Small Nuclear 288, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-288P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-288P Gene

Genomics for RNU6-288P Gene

GeneHancer (GH) Regulatory Elements for RNU6-288P Gene

Promoters and enhancers for RNU6-288P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I063571 Enhancer 1 Ensembl ENCODE 550.8 +1.2 1190 0.9 ATF1 ARNT SIN3A ZBTB40 TCF12 GATA2 FOS ATF7 RCOR1 SMARCA5 GC17M063574 RNU6-288P DCAF7 TACO1 CYB561 GC17M063565
GH17I063549 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 12.1 +22.3 22345 3.9 CLOCK ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC SSRP1 DCAF7 FTSJ3 DDX42 POLG2 CEP95 RNU6-288P TACO1 CYB561 ACE PPIAP55
GH17I063600 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.4 -27.9 -27931 2.5 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 TACO1 DDX42 CEP95 FTSJ3 POLG2 DDX5 SMARCD2 DCAF7 ENSG00000281311 RNU6-288P
GH17I063517 Enhancer 0.9 ENCODE 11 +56.1 56060 0.4 ELF3 FOXA2 ARID4B BATF RAD21 THRB ZNF48 ZSCAN9 RARA GLIS2 DDX5 SMARCD2 FTSJ3 POLG2 CEP95 ENSG00000281311 EEF1DP7 DCAF7 ACE PPIAP55
GH17I063641 Enhancer 0.8 Ensembl ENCODE dbSUPER 11 -68.7 -68656 1.2 ELF4 ZNF207 ZBTB40 FTSJ3 LIMD2 TACO1 RNU6-288P EEF1DP7 MAP3K3 LOC101927898
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-288P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-288P Gene

Genomic Locations for RNU6-288P Gene
chr17:63,573,242-63,573,345
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-288P Gene

Genes around RNU6-288P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-288P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-288P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-288P Gene

Proteins for RNU6-288P Gene

Post-translational modifications for RNU6-288P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-288P Gene

Domains & Families for RNU6-288P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-288P Gene

Function for RNU6-288P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-288P Gene

Localization for RNU6-288P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-288P Gene

Pathways & Interactions for RNU6-288P Gene

SuperPathways for RNU6-288P Gene

No Data Available

Interacting Proteins for RNU6-288P Gene

Gene Ontology (GO) - Biological Process for RNU6-288P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-288P Gene

Drugs & Compounds for RNU6-288P Gene

No Compound Related Data Available

Transcripts for RNU6-288P Gene

mRNA/cDNA for RNU6-288P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-288P Gene

No ASD Table

Relevant External Links for RNU6-288P Gene

GeneLoc Exon Structure for
RNU6-288P
ECgene alternative splicing isoforms for
RNU6-288P

Expression for RNU6-288P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-288P Gene

genes like me logo Genes that share expression patterns with RNU6-288P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-288P Gene

Orthologs for RNU6-288P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-288P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 81 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34 34
  • 81 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25626 34
  • 80 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 77 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U6 34
  • 75 (a)
OneToMany
Species where no ortholog for RNU6-288P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-288P Gene

ENSEMBL:
Gene Tree for RNU6-288P (if available)
TreeFam:
Gene Tree for RNU6-288P (if available)

Paralogs for RNU6-288P Gene

No data available for Paralogs for RNU6-288P Gene

Variants for RNU6-288P Gene

Additional Variant Information for RNU6-288P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-288P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-288P Gene

Disorders for RNU6-288P Gene

No disorders were found for RNU6-288P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-288P Gene

Publications for RNU6-288P Gene

No publications were found for RNU6-288P Gene.

Products for RNU6-288P Gene

Sources for RNU6-288P Gene

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