Aliases for RNU6-233P Gene

Aliases for RNU6-233P Gene

  • RNA, U6 Small Nuclear 233, Pseudogene 2 3 5

External Ids for RNU6-233P Gene

Previous GeneCards Identifiers for RNU6-233P Gene

  • GC17M037703
  • GC00U935739

Summaries for RNU6-233P Gene

GeneCards Summary for RNU6-233P Gene

RNU6-233P (RNA, U6 Small Nuclear 233, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-233P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-233P Gene

Genomics for RNU6-233P Gene

GeneHancer (GH) Regulatory Elements for RNU6-233P Gene

Promoters and enhancers for RNU6-233P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J039548 Enhancer 0.8 ENCODE 500.7 -1.8 -1849 0.2 CTCF ZNF639 REST MYC RAD21 CTBP1 TRIM22 ZBTB26 SMC3 TCF12 RNU6-233P RF00026-437 piR-35674-212 CDK12
GH17J039631 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.7 -88.5 -88458 8.2 ZBTB40 ZNF217 EP300 CTCF ZSCAN5C NRF1 POLR2G NCOR1 GTF2E2 PHF8 STARD3 MED24 PGAP3 MED1 CDK12 MSL1 LOC105371762 TCAP PNMT NEUROD2
GH17J039610 Enhancer 0.7 dbSUPER 12.1 -66.1 -66091 3.5 TEAD4 ZNF830 NR2F2 BCL11A CREB3L1 YY1 NR2C1 NR2C2 NR2F1 HIC1 lnc-NEUROD2-2 STARD3 PGAP3 RNU6-233P RAPGEFL1 NEUROD2
GH17J039746 Enhancer 0.4 dbSUPER 11.1 -200.7 -200652 0.4 U2AF1 ZBTB33 AGO2 AGO1 RBFOX2 PGAP3 RNU6-233P ERBB2 GSDMB STARD3 piR-34911-011 GRB7 lnc-GRB7-1
GH17J039550 Enhancer 0.4 Ensembl 0.7 -5.0 -4957 2.8 FOS HIC1 ZNF596 ZNF449 SCRT2 ENSG00000214546 PGAP3 RNU6-233P piR-35674-212 CDK12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-233P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-233P Gene

Genomic Locations for RNU6-233P Gene
chr17:39,546,104-39,546,244
(GRCh38/hg38)
Size:
141 bases
Orientation:
Minus strand

Genomic View for RNU6-233P Gene

Genes around RNU6-233P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-233P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-233P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-233P Gene

Proteins for RNU6-233P Gene

Post-translational modifications for RNU6-233P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-233P Gene

Domains & Families for RNU6-233P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-233P Gene

Function for RNU6-233P Gene

Phenotypes From GWAS Catalog for RNU6-233P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-233P Gene

Localization for RNU6-233P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-233P Gene

Pathways & Interactions for RNU6-233P Gene

PathCards logo

SuperPathways for RNU6-233P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-233P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-233P Gene

Drugs & Compounds for RNU6-233P Gene

No Compound Related Data Available

Transcripts for RNU6-233P Gene

mRNA/cDNA for RNU6-233P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-233P Gene

No ASD Table

Relevant External Links for RNU6-233P Gene

GeneLoc Exon Structure for
RNU6-233P

Expression for RNU6-233P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-233P Gene

genes like me logo Genes that share expression patterns with RNU6-233P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-233P Gene

Orthologs for RNU6-233P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-233P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 31
  • 77 (a)
OneToOne
Species where no ortholog for RNU6-233P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-233P Gene

ENSEMBL:
Gene Tree for RNU6-233P (if available)
TreeFam:
Gene Tree for RNU6-233P (if available)

Paralogs for RNU6-233P Gene

No data available for Paralogs for RNU6-233P Gene

Variants for RNU6-233P Gene

Additional Variant Information for RNU6-233P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-233P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-233P Gene

Disorders for RNU6-233P Gene

No disorders were found for RNU6-233P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-233P Gene

Publications for RNU6-233P Gene

No publications were found for RNU6-233P Gene.

No data available for Mastermind for RNU6-233P Gene

Products for RNU6-233P Gene

Sources for RNU6-233P Gene