Aliases for RNU6-213P Gene

Aliases for RNU6-213P Gene

  • RNA, U6 Small Nuclear 213, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 1033, Pseudogene 2 3
  • RNU6-1033P 3

External Ids for RNU6-213P Gene

Previous HGNC Symbols for RNU6-213P Gene

  • RNU6-1033P

Previous GeneCards Identifiers for RNU6-213P Gene

  • GC16M015973
  • GC00U935100

Summaries for RNU6-213P Gene

GeneCards Summary for RNU6-213P Gene

RNU6-213P (RNA, U6 Small Nuclear 213, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-213P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-213P Gene

Genomics for RNU6-213P Gene

GeneHancer (GH) Regulatory Elements for RNU6-213P Gene

Promoters and enhancers for RNU6-213P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J015876 Enhancer 0.2 Ensembl 500.7 +1.0 965 0.2 RNU6-213P RF00026-386 piR-32214-242 FOPNL
GH16J015897 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 11.8 -22.2 -22235 5 ZNF217 TCF12 POLR2G SP1 JUND FOS ZNF10 ZIC2 KDM6A ZNF263 FOPNL HSALNG0109838 ABCC1 RNU6-213P MYH11 ENSG00000263065 HSALNG0109837 lnc-FOPNL-1
GH16J015854 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 11.8 +21.3 21315 6.3 TEAD4 FOXA1 GABPA ZBTB26 SAP30 SKI EZH2 MCM3 RBM25 KLF9 MYH11 FOPNL ABCC1 RNU6-213P piR-57460-242
GH16J016017 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -147.3 -147273 14.3 EP300 ZBTB40 ZNF217 NRF1 TCF12 JUND FOS PHB2 ZBTB5 ZIC2 BMERB1 FOPNL RNU6-213P MYH11 ABCC1 NDE1 piR-57133-223 piR-57460-243
GH16J016119 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -243.3 -243278 3.1 PHB2 MYC TAF9B RBM25 NCOR1 MBD2 NFIC ARNT PBX2 MYNN RNU6-213P FOPNL MIR3179-2 NDE1 ABCC1 piR-39098-078 piR-50789
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-213P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-213P Gene

Genomic Locations for RNU6-213P Gene
chr16:15,877,163-15,877,266
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-213P Gene

Genes around RNU6-213P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-213P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-213P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-213P Gene

Proteins for RNU6-213P Gene

Post-translational modifications for RNU6-213P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-213P Gene

Domains & Families for RNU6-213P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-213P Gene

Function for RNU6-213P Gene

Phenotypes From GWAS Catalog for RNU6-213P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-213P Gene

Localization for RNU6-213P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-213P Gene

Pathways & Interactions for RNU6-213P Gene

PathCards logo

SuperPathways for RNU6-213P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-213P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-213P Gene

Drugs & Compounds for RNU6-213P Gene

No Compound Related Data Available

Transcripts for RNU6-213P Gene

mRNA/cDNA for RNU6-213P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-213P Gene

No ASD Table

Relevant External Links for RNU6-213P Gene

GeneLoc Exon Structure for
RNU6-213P

Expression for RNU6-213P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-213P Gene

genes like me logo Genes that share expression patterns with RNU6-213P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-213P Gene

Orthologs for RNU6-213P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-213P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31 31 31 31
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U6 31
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 80 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 31
  • 73 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 31
  • 66 (a)
ManyToMany
Species where no ortholog for RNU6-213P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-213P Gene

ENSEMBL:
Gene Tree for RNU6-213P (if available)
TreeFam:
Gene Tree for RNU6-213P (if available)

Paralogs for RNU6-213P Gene

No data available for Paralogs for RNU6-213P Gene

Variants for RNU6-213P Gene

Additional Variant Information for RNU6-213P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-213P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-213P Gene

Disorders for RNU6-213P Gene

No disorders were found for RNU6-213P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-213P Gene

Publications for RNU6-213P Gene

No publications were found for RNU6-213P Gene.

No data available for Mastermind for RNU6-213P Gene

Products for RNU6-213P Gene

Sources for RNU6-213P Gene