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Aliases for RNU6-171P Gene

Subcategory (RNA class) for RNU6-171P Gene

snRNA

Aliases for RNU6-171P Gene

  • RNA, U6 Small Nuclear 171, Pseudogene 2 3 5

External Ids for RNU6-171P Gene

ORGUL Members for RNU6-171P Gene

Previous GeneCards Identifiers for RNU6-171P Gene

  • GC00U934863

Summaries for RNU6-171P Gene

GeneCards Summary for RNU6-171P Gene

RNU6-171P (RNA, U6 Small Nuclear 171, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-171P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-171P Gene

Genomics for RNU6-171P Gene

GeneHancer (GH) Regulatory Elements for RNU6-171P Gene

Promoters and enhancers for RNU6-171P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I164610 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.7 -27.2 -27244 3.9 HDGF PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 ZNF213 FOS DEK SP3 RNU6-171P GC01P164639 PBX1
GH01I164599 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.3 -38.1 -38050 4.5 ARNT INSM2 SIN3A FEZF1 ZNF2 RAD21 RFX5 ZNF335 ZNF366 SCRT2 RNU6-171P GC01P164639 PBX1
GH01I164657 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.3 +20.7 20737 4.7 CTCF SMARCE1 CLOCK NR2F1 BMI1 DPF2 SP1 ZNF217 CTBP1 JUND RNU6-171P ENSG00000269887 PBX1
GH01I164564 Promoter/Enhancer 0.8 Ensembl dbSUPER 11 -74.7 -74664 0.2 ZNF18 RNU6-171P PBX1 GC01P164639
GH01I164663 Enhancer 0.6 dbSUPER 12.3 +24.2 24249 1.2 NR2F1 EBF1 BATF RELA ZNF366 IKZF1 RUNX3 IKZF2 RNU6-171P ENSG00000269887 PBX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-171P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-171P Gene

Genomic Locations for RNU6-171P Gene
chr1:164,639,565-164,639,671
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-171P Gene

Genes around RNU6-171P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-171P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-171P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-171P Gene

Proteins for RNU6-171P Gene

Post-translational modifications for RNU6-171P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-171P Gene

Domains & Families for RNU6-171P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-171P Gene

Function for RNU6-171P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-171P Gene

Localization for RNU6-171P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-171P Gene

Pathways & Interactions for RNU6-171P Gene

SuperPathways for RNU6-171P Gene

No Data Available

Interacting Proteins for RNU6-171P Gene

Gene Ontology (GO) - Biological Process for RNU6-171P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-171P Gene

Drugs & Compounds for RNU6-171P Gene

No Compound Related Data Available

Transcripts for RNU6-171P Gene

mRNA/cDNA for RNU6-171P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-171P Gene

No ASD Table

Relevant External Links for RNU6-171P Gene

GeneLoc Exon Structure for
RNU6-171P
ECgene alternative splicing isoforms for
RNU6-171P

Expression for RNU6-171P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-171P Gene

genes like me logo Genes that share expression patterns with RNU6-171P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-171P Gene

Orthologs for RNU6-171P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-171P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 34
  • 77 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24661 34
  • 74 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 34
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 81 (a)
OneToMany
Species where no ortholog for RNU6-171P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-171P Gene

ENSEMBL:
Gene Tree for RNU6-171P (if available)
TreeFam:
Gene Tree for RNU6-171P (if available)

Paralogs for RNU6-171P Gene

No data available for Paralogs for RNU6-171P Gene

Variants for RNU6-171P Gene

Additional Variant Information for RNU6-171P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-171P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-171P Gene

Disorders for RNU6-171P Gene

No disorders were found for RNU6-171P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-171P Gene

Publications for RNU6-171P Gene

No publications were found for RNU6-171P Gene.

Products for RNU6-171P Gene

Sources for RNU6-171P Gene

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