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Aliases for RNU6-15P Gene

Subcategory (RNA class) for RNU6-15P Gene

snRNA

Aliases for RNU6-15P Gene

  • RNA, U6 Small Nuclear 15, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 15 2
  • RNU6-15 3

External Ids for RNU6-15P Gene

ORGUL Members for RNU6-15P Gene

Previous HGNC Symbols for RNU6-15P Gene

  • RNU6-15

Previous GeneCards Identifiers for RNU6-15P Gene

  • GC10P021614

Summaries for RNU6-15P Gene

GeneCards Summary for RNU6-15P Gene

RNU6-15P (RNA, U6 Small Nuclear 15, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-15P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-15P Gene

Genomics for RNU6-15P Gene

GeneHancer (GH) Regulatory Elements for RNU6-15P Gene

Promoters and enhancers for RNU6-15P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I021289 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.9 -29.4 -29448 6.7 PKNOX1 SIN3A FEZF1 ZNF2 ETS1 ATF7 SP3 REST TSHZ1 MAFF RNU6-15P MLLT10 GC10P021323 LUZP4P1
GH10I021278 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.8 -39.0 -39009 9.3 HDGF PKNOX1 RB1 ZNF133 ARID4B SIN3A ZNF2 DNMT3B ZNF48 RAD21 RNU6-15P ENSG00000199222 MIR1915 CASC10 NEBL LUZP4P1 GC10P021323
GH10I021361 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.7 +42.0 41971 5.8 PKNOX1 ATF1 NEUROD1 SIN3A ZNF548 FOS REST NFIL3 SMARCA4 MYNN MLLT10 RNU6-15P ENSG00000261671 LOC105376444 GC10M021347 GC10M021362
GH10I021372 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.6 +51.1 51087 1.1 MZF1 ZNF335 ZNF366 ZNF350 KLF7 SP3 YY2 REST ZNF398 SP1 GC10M021362 LOC105376444 RNU6-15P
GH10I021297 Enhancer 1 ENCODE dbSUPER 12.9 -24.2 -24228 0.9 ZSCAN4 ZNF76 GLI4 ZNF2 ZNF121 ZNF366 KLF7 ATF7 ZNF391 IKZF2 MLLT10 AMD1P1 RNU6-15P DNAJC1 GC10P021323 LUZP4P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-15P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-15P Gene

Genomic Locations for RNU6-15P Gene
chr10:21,321,961-21,322,067
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand
chr10:21,610,890-21,610,996
(GRCh37/hg19)

Genomic View for RNU6-15P Gene

Genes around RNU6-15P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-15P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-15P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-15P Gene

Proteins for RNU6-15P Gene

Post-translational modifications for RNU6-15P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-15P Gene

Domains & Families for RNU6-15P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-15P Gene

Function for RNU6-15P Gene

Phenotypes From GWAS Catalog for RNU6-15P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-15P Gene

Localization for RNU6-15P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-15P Gene

Pathways & Interactions for RNU6-15P Gene

SuperPathways for RNU6-15P Gene

No Data Available

Interacting Proteins for RNU6-15P Gene

Gene Ontology (GO) - Biological Process for RNU6-15P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-15P Gene

Drugs & Compounds for RNU6-15P Gene

No Compound Related Data Available

Transcripts for RNU6-15P Gene

mRNA/cDNA for RNU6-15P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-15P Gene

No ASD Table

Relevant External Links for RNU6-15P Gene

GeneLoc Exon Structure for
RNU6-15P
ECgene alternative splicing isoforms for
RNU6-15P

Expression for RNU6-15P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-15P Gene

genes like me logo Genes that share expression patterns with RNU6-15P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-15P Gene

Orthologs for RNU6-15P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-15P Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia U6 34
  • 97 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 93 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25798 34
  • 93 (a)
ManyToMany
Species where no ortholog for RNU6-15P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-15P Gene

ENSEMBL:
Gene Tree for RNU6-15P (if available)
TreeFam:
Gene Tree for RNU6-15P (if available)

Paralogs for RNU6-15P Gene

No data available for Paralogs for RNU6-15P Gene

Variants for RNU6-15P Gene

Structural Variations from Database of Genomic Variants (DGV) for RNU6-15P Gene

Variant ID Type Subtype PubMed ID
esv2761579 CNV gain 21179565
nsv831807 CNV gain 17160897

Additional Variant Information for RNU6-15P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-15P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for RNU6-15P Gene

Disorders for RNU6-15P Gene

No disorders were found for RNU6-15P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-15P Gene

Publications for RNU6-15P Gene

No publications were found for RNU6-15P Gene.

Products for RNU6-15P Gene

Sources for RNU6-15P Gene

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