Aliases for RNU6-142P Gene

Aliases for RNU6-142P Gene

  • RNA, U6 Small Nuclear 142, Pseudogene 2 3 5
  • RNU6-142P 5

External Ids for RNU6-142P Gene

Previous GeneCards Identifiers for RNU6-142P Gene

  • GC18M060400
  • GC00U935965

Summaries for RNU6-142P Gene

GeneCards Summary for RNU6-142P Gene

RNU6-142P (RNA, U6 Small Nuclear 142, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-142P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-142P Gene

Genomics for RNU6-142P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-142P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J062729 Enhancer 0.3 Ensembl 250.7 -0.4 -355 4.2 JUNB RUNX3 RNU6-142P RF00026-493 RF00994-447 PHLPP1 BCL2
GH18J062780 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.3 -56.5 -56469 14.8 BCL11A FEZF1 CEBPA ZEB1 ZIC2 CEBPB ZNF623 FOXA2 RXRA ZNF843 PHLPP1 ENSG00000267560 RNU6-142P piR-52079-090 HSALNG0122006 BCL2
GH18J062795 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.9 -64.9 -64882 1.4 MXD4 CEBPA HOMEZ KDM6A THAP11 FOXA2 ZNF511 SMAD4 SAP130 RXRA PHLPP1 RNU6-142P BCL2 piR-52079-090 HSALNG0122006
GH18J062808 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.3 -76.8 -76769 1.8 IKZF1 CEBPB ZNF513 EP300 ZEB2 RXRA JUND KLF16 SPI1 NFE2 PHLPP1 RNU6-142P ZCCHC2 piR-52079-090 HSALNG0122007 BCL2
GH18J062811 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.4 -82.6 -82569 5.4 BCL11A FEZF1 CEBPA IRF4 SMAD4 EBF1 ZNF843 RBM22 JUND FOSL1 PHLPP1 RNU6-142P piR-52079-090 HSALNG0122007 BCL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-142P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-142P Gene

Latest Assembly
chr18:62,731,226-62,731,332
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Previous Assembly
chr18:60,398,459-60,398,565
(GRCh37/hg19 by Entrez Gene)
Size:
107 bases
Orientation:
Minus strand

chr18:60,398,459-60,398,565
(GRCh37/hg19 by Ensembl)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-142P Gene

Genes around RNU6-142P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-142P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-142P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-142P Gene

Proteins for RNU6-142P Gene

Post-translational modifications for RNU6-142P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-142P Gene

Domains & Families for RNU6-142P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-142P Gene

Function for RNU6-142P Gene

Phenotypes From GWAS Catalog for RNU6-142P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-142P Gene

Localization for RNU6-142P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-142P Gene

Pathways & Interactions for RNU6-142P Gene

PathCards logo

SuperPathways for RNU6-142P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-142P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-142P Gene

Drugs & Compounds for RNU6-142P Gene

No Compound Related Data Available

Transcripts for RNU6-142P Gene

mRNA/cDNA for RNU6-142P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-142P Gene

No ASD Table

Relevant External Links for RNU6-142P Gene

GeneLoc Exon Structure for
RNU6-142P

Expression for RNU6-142P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-142P Gene

genes like me logo Genes that share expression patterns with RNU6-142P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-142P Gene

Orthologs for RNU6-142P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-142P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 100 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia U6 31
  • 82 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U6 31
  • 80 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia U6 31
  • 79 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 79 (a)
ManyToMany
Species where no ortholog for RNU6-142P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-142P Gene

ENSEMBL:
Gene Tree for RNU6-142P (if available)
TreeFam:
Gene Tree for RNU6-142P (if available)

Paralogs for RNU6-142P Gene

No data available for Paralogs for RNU6-142P Gene

Variants for RNU6-142P Gene

Additional Variant Information for RNU6-142P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-142P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-142P Gene

Disorders for RNU6-142P Gene

No disorders were found for RNU6-142P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-142P Gene

Publications for RNU6-142P Gene

No publications were found for RNU6-142P Gene.

No data available for Mastermind for RNU6-142P Gene

Products for RNU6-142P Gene

Sources for RNU6-142P Gene