Aliases for RNU6-1313P Gene

Aliases for RNU6-1313P Gene

  • RNA, U6 Small Nuclear 1313, Pseudogene 2 3 5

External Ids for RNU6-1313P Gene

Previous GeneCards Identifiers for RNU6-1313P Gene

  • GC17M048045
  • GC00U935441

Summaries for RNU6-1313P Gene

GeneCards Summary for RNU6-1313P Gene

RNU6-1313P (RNA, U6 Small Nuclear 1313, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1313P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1313P Gene

Genomics for RNU6-1313P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1313P Gene

Promoters and enhancers for RNU6-1313P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049969 Enhancer 0.8 Ensembl ENCODE 500.7 +2.0 1975 1.6 EZH2 ZBTB17 ZFHX2 ZNF621 CBX8 SUZ12 CBX2 FOXP1 RNF2 ZNF571 RF00026-447 RNU6-1313P ENSG00000250286 LUC7L3 EME1 MYCBPAP DLX4 HSALNG0117228
GH17J049967 Enhancer 0.7 Ensembl ENCODE 500.7 +0.6 577 0.8 EZH2 TCF12 SPI1 SUZ12 JUND RNF2 SP1 EGR1 CTBP2 POLR2A RF00026-447 RNU6-1313P DLX4 HSALNG0117228
GH17J049970 Enhancer 0.5 ENCODE 500.7 +1.0 1024 0 EZH2 TCF12 SUZ12 CBX2 RNF2 EGR1 CTBP2 POLR2A RF00026-447 RNU6-1313P EME1 HSALNG0117228
GH17J049965 Enhancer 0.5 ENCODE 500.7 +1.1 1134 0 EZH2 CBX2 RNF2 SUZ12 CTBP2 POLR2A RF00026-447 RNU6-1313P EME1 HSALNG0117228
GH17J049885 Enhancer 1.3 FANTOM5 Ensembl ENCODE 11.4 +77.4 77363 6.1 EP300 ZNF217 POLR2G NCOR1 TEAD4 ZIC2 KDM6A CLOCK CHD1 ZBTB7A ENSG00000248954 ENSG00000262837 FLJ45513 DLX3 TAC4 DLX4 ENSG00000248172 RNU6-1313P LUC7L3 UBE2Z
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1313P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1313P Gene

Genomic Locations for RNU6-1313P Gene
chr17:49,966,075-49,966,176
(GRCh38/hg38)
Size:
102 bases
Orientation:
Minus strand

Genomic View for RNU6-1313P Gene

Genes around RNU6-1313P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1313P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1313P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1313P Gene

Proteins for RNU6-1313P Gene

Post-translational modifications for RNU6-1313P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1313P Gene

Domains & Families for RNU6-1313P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1313P Gene

Function for RNU6-1313P Gene

Phenotypes From GWAS Catalog for RNU6-1313P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1313P Gene

Localization for RNU6-1313P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1313P Gene

Pathways & Interactions for RNU6-1313P Gene

PathCards logo

SuperPathways for RNU6-1313P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-1313P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1313P Gene

Drugs & Compounds for RNU6-1313P Gene

No Compound Related Data Available

Transcripts for RNU6-1313P Gene

mRNA/cDNA for RNU6-1313P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1313P Gene

No ASD Table

Relevant External Links for RNU6-1313P Gene

GeneLoc Exon Structure for
RNU6-1313P

Expression for RNU6-1313P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1313P Gene

genes like me logo Genes that share expression patterns with RNU6-1313P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1313P Gene

Orthologs for RNU6-1313P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1313P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 31
  • 66 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 31
  • 65 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26133 31
  • 61 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 31
  • 60 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 60 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6 31
  • 55 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea U6 31
  • 62 (a)
OneToMany
Species where no ortholog for RNU6-1313P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-1313P Gene

ENSEMBL:
Gene Tree for RNU6-1313P (if available)
TreeFam:
Gene Tree for RNU6-1313P (if available)

Paralogs for RNU6-1313P Gene

No data available for Paralogs for RNU6-1313P Gene

Variants for RNU6-1313P Gene

Additional Variant Information for RNU6-1313P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1313P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1313P Gene

Disorders for RNU6-1313P Gene

No disorders were found for RNU6-1313P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1313P Gene

Publications for RNU6-1313P Gene

No publications were found for RNU6-1313P Gene.

Products for RNU6-1313P Gene

Sources for RNU6-1313P Gene