Aliases for RNU6-1310P Gene

Aliases for RNU6-1310P Gene

  • RNA, U6 Small Nuclear 1310, Pseudogene 2 3 5

External Ids for RNU6-1310P Gene

Previous GeneCards Identifiers for RNU6-1310P Gene

  • GC01M168235
  • GC00U935510

Summaries for RNU6-1310P Gene

GeneCards Summary for RNU6-1310P Gene

RNU6-1310P (RNA, U6 Small Nuclear 1310, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1310P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1310P Gene

Genomics for RNU6-1310P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1310P Gene

Promoters and enhancers for RNU6-1310P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J168225 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 11.4 +36.4 36380 4.6 ZBTB40 EP300 NRF1 TCF12 POLR2G GTF2E2 PHF8 ZFX ZNF639 ZNF10 TBX19 NONHSAG003392.2 SFT2D2 lnc-GPR161-2 RNU6-1310P TIPRL piR-31871
GH01J168285 Enhancer 1.1 Ensembl ENCODE 12 -23.5 -23520 4 ZSCAN5C GTF2E2 JUND FOS PHB2 ZNF10 AFF1 CTCF HES1 MYC RNU6-1310P MIR557 TBX19 RF01045-011
GH01J168291 Enhancer 0.3 Ensembl 12 -28.2 -28220 1 OSR2 EZH2 RNU6-1310P TBX19 RF01045-011
GH01J168293 Enhancer 0.3 Ensembl 12 -30.1 -30120 0.4 ZBTB33 RNU6-1310P TBX19 RF01045-011
GH01J168261 Enhancer 0.6 Ensembl 0.7 +2.5 2481 3.2 ZNF585B NR3C1 ZNF707 NR2F2 FOS STAT1 GATA2 JUN REST POLR2A TBX19 RF00026-082 RNU6-1310P piR-44868 NONHSAG003392.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1310P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1310P Gene

Genomic Locations for RNU6-1310P Gene
chr1:168,263,375-168,263,481
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Genomic View for RNU6-1310P Gene

Genes around RNU6-1310P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1310P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1310P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1310P Gene

Proteins for RNU6-1310P Gene

Post-translational modifications for RNU6-1310P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1310P Gene

Domains & Families for RNU6-1310P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1310P Gene

Function for RNU6-1310P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1310P Gene

Localization for RNU6-1310P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1310P Gene

Pathways & Interactions for RNU6-1310P Gene

PathCards logo

SuperPathways for RNU6-1310P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-1310P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1310P Gene

Drugs & Compounds for RNU6-1310P Gene

No Compound Related Data Available

Transcripts for RNU6-1310P Gene

mRNA/cDNA for RNU6-1310P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1310P Gene

No ASD Table

Relevant External Links for RNU6-1310P Gene

GeneLoc Exon Structure for
RNU6-1310P

Expression for RNU6-1310P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1310P Gene

genes like me logo Genes that share expression patterns with RNU6-1310P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1310P Gene

Orthologs for RNU6-1310P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1310P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 31
  • 91 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U6 31
  • 87 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 87 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23814 31
  • 86 (a)
ManyToMany
Gm22003 31
  • 85 (a)
ManyToMany
Gm22756 31
  • 85 (a)
ManyToMany
Gm25245 31
  • 85 (a)
ManyToMany
Gm26054 31
  • 84 (a)
ManyToMany
Gm26454 31
  • 84 (a)
ManyToMany
Gm24481 31
  • 82 (a)
ManyToMany
Gm22577 31
  • 82 (a)
ManyToMany
Gm24448 31
  • 81 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 31 31
  • 82 (a)
ManyToMany
Species where no ortholog for RNU6-1310P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1310P Gene

ENSEMBL:
Gene Tree for RNU6-1310P (if available)
TreeFam:
Gene Tree for RNU6-1310P (if available)

Paralogs for RNU6-1310P Gene

No data available for Paralogs for RNU6-1310P Gene

Variants for RNU6-1310P Gene

Additional Variant Information for RNU6-1310P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1310P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1310P Gene

Disorders for RNU6-1310P Gene

No disorders were found for RNU6-1310P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1310P Gene

Publications for RNU6-1310P Gene

No publications were found for RNU6-1310P Gene.

No data available for Mastermind for RNU6-1310P Gene

Products for RNU6-1310P Gene

Sources for RNU6-1310P Gene